Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00550 ATGGCTGCGAATTCATCGTTCGAAGGTATTGCTCTTGATCCTTCTAAATGTAGTAAATTGAGTATGGAGGAAAAAAGAGCGCTTGTATATGAAATATCTAATGATGGTGCATCCGAGGTGCTGCAGTCGTGGAGCCGTCAAGAGATTTTGCAAATCTTGTGTGCTGAGATGGGAAAAGAAAGGAAGTATACTGGGCTGACAAAGTTGAAAATTATCGAAAATCTTCTGAAAATTGTTTCTGAAAAGAAATCAGGCGGCCATGATATTGCCACAGACCCTGAATCACATTCTTTTCCAGCAACTGGCCAGAAACCTGCTAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTGGCTGCTCCTGAAAACAATGTTATAGTCAATAATGGTGGTGATGTGAGTAACAATACAACTTACTGCAAAAACTCCGCATGCAAGGCTACCCTAAATCAAGGAGATGCATTTTGTAAAAGATGTTCATGTTGTATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGCTAATATGCAGTTCTGAAGCTCCATTTCCTGGTGTTTCCTGCGGCTTGTCATGTCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGACGGTGAACGCACCAAACTTGATGGAAACTTCTACTGTGTCTCTTGTGGGAAAGTAAATGACTTACTCGGATGCTGGCGAAAACAAGTGATGGTAGCAAAGGATGCTAGACGTGTGGACATACTCTGTTATCGTGTCTCCTTAAGCCAAAAACTTTTGAAAGGGACAGAAAAGCATGTAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGACTGGCTCACCATTGAAGATTGGTAGGGGGATTGTGAACAGGCTTTCTTCAGGACCCGAGGTTCAGAGACTCTGCGGTGTTGCTCTTGAATCACTTGATTCAATACTTTCTAGAAGGTTCTTGCCTCCATCACCCAATCAAACTATTCAAGATGCAAGTTTACTAACTCCAAATATAAATATGGTAAAGTTCGAAGATGTCACCGCAACATCCCTCACTGTTCTTTTGTGTTTGGAAGATTCTTCTGGAGAAAATAATGCCGGTTACGCCGTGTGGCATCGTAAAGCCGGTGATGTGAACTATCCATTGGACCCGACTTGCACAACTCTCCTACCAAATAGAAAGCTGAGCATCAGGGATCTACTTCCAGCTACAGAATACAGTTTGAAATTTGTTTCCAATGATTTGAGGAAGTCACGTATGTGCGAAGTTCAAGTCTCAACAGAGCATGGTGAGGATGACGTCCCAAATTGCTCAGCAACGGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCCTCATCTGTGGAAGATGAAACTAATCATAGCGACCAGACTGATAATCGATCAGATAATTATCCTTCTTATCACAAGGATAGTGACCAGCTTGCTTCTGGTAATCAATCAAATGATGTTATTAATTGTTCCAAATTGGGTGGAGTGGGACTTCCCACCGATACAGATTCCTTGTCAGACAAGCAAGCTGCTGTGGGAATGACTAGCAACACAATACCTAGTTCAGATGTACTAAAGCTTGAAAACAAGCATTCACAAGAGGAACAAGTAACTGAGGACATAAGCACTGATGATGGGTCAGTTCCAACGGGAAGGGAGTGTGTGCCGTTAGTAGGTTGCTCAGAAGGGAGCTTGCCTAATACTCCCAGCAGGTTGGAAATACTTAAAGATGGTCTAGGAAAAAGAGGTAGATCCAAATTCAGTAGCAAAGATCTAGAAAAAGGACCTGGGAAAAGGAGTGGCCCTCGAGATGGAAGCAAACCCAAGAAGAGAAGTGGTGAAAGGAAAAACGAGGGCTGCGAGGCTAATGGTTTTCCAGAGCGGGATCTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATTGAGAAGAACTTCAGGCAGAAATTTCTGACATGGTACAGCTTAAGAGCAACCCCTGAAGAAATAAGGATTGTGAAAATATATGTAGATACATTTCTTGAAGATCCAGCTTCTCTTGCAGAGCAACTTGTGGACACCTTCTCCGAATGCATGTCAAACAAGAGATCATCAGTACCCGCAGGGTTCTGCATGAAGCTTTGGCATTGA 2196 0.4258 MAANSSFEGIALDPSKCSKLSMEEKRALVYEISNDGASEVLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHDIATDPESHSFPATGQKPAKRQRKTENPSRLAAPENNVIVNNGGDVSNNTTYCKNSACKATLNQGDAFCKRCSCCICHQYDDNKDPSLWLICSSEAPFPGVSCGLSCHLECALKHDGSGIGKDGERTKLDGNFYCVSCGKVNDLLGCWRKQVMVAKDARRVDILCYRVSLSQKLLKGTEKHVELYKIVDEAVKKLEPEVGPLTGSPLKIGRGIVNRLSSGPEVQRLCGVALESLDSILSRRFLPPSPNQTIQDASLLTPNINMVKFEDVTATSLTVLLCLEDSSGENNAGYAVWHRKAGDVNYPLDPTCTTLLPNRKLSIRDLLPATEYSLKFVSNDLRKSRMCEVQVSTEHGEDDVPNCSATERSQSPVTNCSSLSNPSSVEDETNHSDQTDNRSDNYPSYHKDSDQLASGNQSNDVINCSKLGGVGLPTDTDSLSDKQAAVGMTSNTIPSSDVLKLENKHSQEEQVTEDISTDDGSVPTGRECVPLVGCSEGSLPNTPSRLEILKDGLGKRGRSKFSSKDLEKGPGKRSGPRDGSKPKKRSGERKNEGCEANGFPERDLEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPEEIRIVKIYVDTFLEDPASLAEQLVDTFSECMSNKRSSVPAGFCMKLWH 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00550 731 MobiDBLite consensus disorder prediction 473 489 - -
Vivi1g00550 731 MobiDBLite consensus disorder prediction 490 504 - -
Vivi1g00550 731 MobiDBLite consensus disorder prediction 441 472 - -
Vivi1g00550 731 MobiDBLite consensus disorder prediction 599 639 - -
Vivi1g00550 731 MobiDBLite consensus disorder prediction 540 570 - -
Vivi1g00550 731 CDD PHD_VIN3_plant 160 225 - -
Vivi1g00550 731 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 731 IPR044514 GO:0010048|GO:0040029
Vivi1g00550 731 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Vivi1g00550 731 MobiDBLite consensus disorder prediction 436 504 - -
Vivi1g00550 731 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00550 Vivi-Chr1 11909540 11915271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00550 4 609 PHD Gene Family AT4G30200 46.345 2.59e-154 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00550 - - gmx:100819331 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00550 1 11909540 11915271 Vivi1g00550 1 11909540 11915271 ECH