Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00548 ATGGACTCATCCTCCTCTTCACCCCCCACAAACACCAACAACACCTCCCTAGCTTTCTCTCTTTCCAACCACTTCCCTAATCCTCCACACTCCTCTTCCTCTCACCTCTCTCTCTTCCACTCCTTCACCCCTTATCCTCCCCCAACTCCATCTCTCACCCTCACAGGTTCACCGGAGCCAACTGACAGAGGAACCACCAACCTCTCCATATTCAGCGGCGGAAACAAGCTCGAGAATTTTCTAGGAAACTCCACCGCCACAACAAGAACCACCACATATGCACCCACAGAACTTCACCGTCTTTCCACCGACATATACGATTATGAACTGAAAAAAACCATAGCCGCTTGCTTCCCTCATGGCTACCCTACCGAACCAAACTCCGAACCTCCCAAACCTTCCCCCAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATTTACCGCGGCGTCACCCGACATAGATGGACGGGGAGATATGAAGCTCATTTATGGGACAATAGTTGCAGAAGAGAAGGACAAAGTAGAAAAGGAAGACAAGTTTATTTAGGTGGTTATGATAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTTAAGTACTGGGGTCCAACTACCACTACCAACTTTCCAATTTGTAACTATGAGAAAGAGCTTGATGGCATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGTTTTTCAAGAGGAGCATCAATTTACCGAGGAGTAACAAGACACCACCAGCATGGTAGATGGCAGGCAAGGATAGGTAGAGTTGCCGGAAACAAAGACCTTTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCTGAAGCTTATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTTACAAACTTCGACATGAGTCGCTATGACGTTAAAAGCATCGCAAATAGTTCTCTTCCCATAGGCGGTTTATCTAATAAAAACAGCAAAGTTTCTACAGATCATTCTTTATCAGAAAGCAAAAGCATTGATGTTGCAAGTATATCAGATGAAAGAACTCCGTCCACAGCCTTTACAATAACTCAGCAGCCTTCAAATTCTACATTAAGTTTCGCGATTCCGATAAAACAAGATCCTTCTTCAGATTACTGGTCCAATATTCTTGGATTTAATAGTAATAATAGCAATAATAATCCTAGTCATGCTGTTCTTCCATCTTCAACACCCTTCAACATGGATTTTTCTTCGCATGTACCTTCGAATACAAATGGCGATAACAATGGAGGCTTTTTCAGTGGATCAGTTGTTCAGCAGCAACAAAATGGAAACAATTCTTCTTCTTCATCATCATCATCGTCATCTTCAACAAGTTCGATTCCATTTGCTACACCGATATTTTCCTTAAATAGTACTAATAGTTATGGAAACAACTGGATCAATAATGGACACACATTCCAAACACATGCAAAACCAAGTCTGTTTCAAACACCAATATTCGGAATGGAATGA 1518 0.4282 MDSSSSSPPTNTNNTSLAFSLSNHFPNPPHSSSSHLSLFHSFTPYPPPTPSLTLTGSPEPTDRGTTNLSIFSGGNKLENFLGNSTATTRTTTYAPTELHRLSTDIYDYELKKTIAACFPHGYPTEPNSEPPKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPICNYEKELDGMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNSKVSTDHSLSESKSIDVASISDERTPSTAFTITQQPSNSTLSFAIPIKQDPSSDYWSNILGFNSNNSNNNPSHAVLPSSTPFNMDFSSHVPSNTNGDNNGGFFSGSVVQQQQNGNNSSSSSSSSSSSTSSIPFATPIFSLNSTNSYGNNWINNGHTFQTHAKPSLFQTPIFGME 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00548 505 FunFam AP2-like ethylene-responsive transcription factor ANT 147 216 - -
Vivi1g00548 505 SUPERFAMILY DNA-binding domain 249 310 IPR016177 GO:0003677
Vivi1g00548 505 Pfam AP2 domain 250 300 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 Pfam AP2 domain 148 206 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 SUPERFAMILY DNA-binding domain 147 215 IPR016177 GO:0003677
Vivi1g00548 505 ProSiteProfiles AP2/ERF domain profile. 148 214 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 CDD AP2 249 310 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 Gene3D AP2/ERF domain 250 310 IPR036955 GO:0003700|GO:0006355
Vivi1g00548 505 Gene3D AP2/ERF domain 148 216 IPR036955 GO:0003700|GO:0006355
Vivi1g00548 505 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g00548 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 97 423 - -
Vivi1g00548 505 FunFam AP2-like ethylene-responsive transcription factor 249 310 - -
Vivi1g00548 505 PRINTS Ethylene responsive element binding protein signature 290 310 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 SMART rav1_2 148 220 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 SMART rav1_2 250 314 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 MobiDBLite consensus disorder prediction 417 460 - -
Vivi1g00548 505 CDD AP2 147 215 IPR001471 GO:0003700|GO:0006355
Vivi1g00548 505 ProSiteProfiles AP2/ERF domain profile. 250 308 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00548 Vivi-Chr1 11765800 11768901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00548 102 505 AP2-EREBP Transcription Factor Family AT5G57390 56.881 6.71e-151 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi1g00548 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00548 K09285 - gmx:100803558 606.675