Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00547 ATGAATGCGAGTCAGTTCGACGGTAACGCTGCCTTCTCCGGCGGCGGTTTCACGGTTTCTCAGGCCACCACGAGCGGCGACTCTCCCTTCACTCCCTCCAAGAATCGTGATGCTCAGGCCTTGCTTCCTCTGACGATCAAGCAGATCAACGATGCTTATCAAGCAAGTGATGATAAAACCAATCTGACTATTGATGGAGTTGACGTTGGCACAATTTCTCTTCTTGGAAGGGTGTGTAACAAAGCTGGACAGATCACTGATGTTAAATTTGTACTTGATGATGGTACTGGAATGATTGAGTGCACTAAATGGCTTCAAGAACCTGCAGATTCAATTCAAGTGGAGAGTATCTTAAATGGAATGTATGTGCGGGTTTATGGACACTTGAAAGGCTTTCAGGGTAAAAAAAACTTAAATGTTTTCTCTTTTAGACCTGTGACTGACTTCAACGAGATTACCCACCATTTCATTGATTGCATATATGTTCATCTATATAATTCGAAGTTACGGGCTAGCAACTCCAATCAGCAACATGTTCCTAATTCCACACAAATCACTCCCACAAGAGGTCATCAATCTCAAGCCGTATTGGCAAATCAATTTTCTGCTAATAATGGTCAGAAGACTGTTGAAGATTTGGTGTTAGAAATCTTGCATCATCCCACAAACAGGACAAAGATGGGAGGAACACCTCTTGATGTTATTAGACAACACCTTGGAATTCCCATGGACAAACTCATGTTGGCTATTACAAATCTTGCGAATGAAGGTACCATTTATGAAGGTGAACAAAATCACTATAAGTCCATTGCCGACGGTTGA 822 0.4209 MNASQFDGNAAFSGGGFTVSQATTSGDSPFTPSKNRDAQALLPLTIKQINDAYQASDDKTNLTIDGVDVGTISLLGRVCNKAGQITDVKFVLDDGTGMIECTKWLQEPADSIQVESILNGMYVRVYGHLKGFQGKKNLNVFSFRPVTDFNEITHHFIDCIYVHLYNSKLRASNSNQQHVPNSTQITPTRGHQSQAVLANQFSANNGQKTVEDLVLEILHHPTNRTKMGGTPLDVIRQHLGIPMDKLMLAITNLANEGTIYEGEQNHYKSIADG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00547 273 Gene3D - 201 271 IPR036388 -
Vivi1g00547 273 PANTHER REPLICATION PROTEIN A-RELATED 5 270 IPR040260 -
Vivi1g00547 273 FunFam replication protein A 32 kDa subunit A-like 34 168 - -
Vivi1g00547 273 PIRSF RPA32 2 271 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g00547 273 Pfam Replication protein A C terminal 163 261 IPR014892 -
Vivi1g00547 273 Gene3D - 33 168 IPR012340 -
Vivi1g00547 273 CDD RPA2_DBD_D 71 164 - -
Vivi1g00547 273 SUPERFAMILY Nucleic acid-binding proteins 41 167 IPR012340 -
Vivi1g00547 273 Pfam OB-fold nucleic acid binding domain 76 143 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00547 Vivi-Chr1 11695619 11701566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00547 1 270 Core DNA Replication Machinery Family AT2G24490 40.569 2.67e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00547 K10739 - gmx:100782819 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00547 1 11695619 11701566 Vivi1g00547 1 11695619 11701566 ECH