Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00516 ATGTCACCTTCTCCTTCACCTTCTCTTTCTCTTCCACAACAACAACAAGAATTCATATTCCGATCTAAACTCCCTGACATTGAAATCCCAACACACCTTCCCTTACACTCTTACCTTTTCGAAAACCTCTCTCAATTCCACAACCGTCCATGTCTCATCAATGGCGACACCGGCGAAACTTTCACCTACTCCGACGTCCACCTCACCGCCCGCAAAATCGCTTCCGGTTTAAACACAATCGGAATCAACCAAGGGGATGTCATCATGATCGTCCTCCGCAACTCTCCGCAATTTGCACTCACTTTCCTGGGCGCCTCATTTCGCGGCGCGGTCATCACCACCGCGAATCCTTTCTACACCTCATCGGAGCTAGCTAAACAAGCCACCGCAACGAAAACAAAACTCATCGTAACTCAATCTGCATATGTCAGTAAAATCAAGGAGTTTGCAAAACTCAACAATATCAAAATCGTGTGCATTGATGATTCATCGTCCCAGTCATCACCATCATCAGAATCTGAAATGGAACAAGGTGTTTTGGATTTCTCAATTTTAACAAATGCTGACGAAAACGAAGCACCGGAAGTGAAGATAAACCCTAACGATCTCGTTGCGTTACCGTTTTCTTCTGGAACTTCAGGATTTCCGAAAGGTGTTATGTTAACACATGCAAATTTAGTTACAACAATATCACAGTTAGTTGACGGTGAAAATCCTCACCAATACACTGACAGCGAAGATGTGTTACTCTGTGTGTTACCTATGTTTCATATCTATGCGCTCAATTCGATTCTACTATGCGGAATTCGAGCTGGTGCTGCGGTGTTGATCGTGGAGAAATTTGAGATTAAAACTGTTTTAGAACTTATTGAAAAGTATAAAGTGACGGTGGTCTCGTTTGTGCCACCGATTGTTTTAGCGTTGGTGAAGAGTGGAGAGTCGCATCGATGCGACTTGTCATCTATTAGGGCGATGATAACAGGTGCTGCACCCATGGGAATGGAACTTGAACAAGCTGTCAAGGATAGGATGCCGCAAACAGTGCTTGGACAGGGATATGGGATGACGGAAGCAGGACCGCTTTCAATTAGTTTAGCATTTGCGAAGGAACCGTTCAAGACGAAACCCGGTGCATGCGGCACCGTGGTGAGAAACGCCGAGATGAAAGTAGTGGACACAGAAACTGGTGTTTCTCTTCCAAGAAGCAAAGCTGGTGAAATTTGCATTAGAGGCACAAAGGTTATGAAAGGATACTTGAATGATCCCGAGGCGACAAAGAAAACTATAGACAAAGATGGATGGCTACACACAGGTGACATTGGTTTAATCGATGACGATGATGAACTTTTCATTGTGGATCGATTAAAGGAATTGATTAAATACAAAGGATTTCAAGTTGCACCTGCTGAGCTCGAAGCATTGTTGATTGCTCACCCAAACATTTCTGAAGCTGCTGTTGTACCATTGAAAGATGAAGTTGCCGGAGAACTTCCAGTTGCATTTGTTGTTAGATCAAACGGTTCAAAGATCAGCGAGGATGAAATCAAGCAATACGTTTCACAACAGGTTGTGTTTTACAAGAGAATCAACAGAGTTTATTTTACGGACGCTATTCCAAAAGCGGCCTCGGGTAAAATTCTGCGAAAGGAATTAACTGCAAGACTTAACGAAGGATTAGTGGCGTGA 1686 0.4359 MSPSPSPSLSLPQQQQEFIFRSKLPDIEIPTHLPLHSYLFENLSQFHNRPCLINGDTGETFTYSDVHLTARKIASGLNTIGINQGDVIMIVLRNSPQFALTFLGASFRGAVITTANPFYTSSELAKQATATKTKLIVTQSAYVSKIKEFAKLNNIKIVCIDDSSSQSSPSSESEMEQGVLDFSILTNADENEAPEVKINPNDLVALPFSSGTSGFPKGVMLTHANLVTTISQLVDGENPHQYTDSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVEKFEIKTVLELIEKYKVTVVSFVPPIVLALVKSGESHRCDLSSIRAMITGAAPMGMELEQAVKDRMPQTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKVVDTETGVSLPRSKAGEICIRGTKVMKGYLNDPEATKKTIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISEAAVVPLKDEVAGELPVAFVVRSNGSKISEDEIKQYVSQQVVFYKRINRVYFTDAIPKAASGKILRKELTARLNEGLVA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00516 561 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
Vivi1g00516 561 Gene3D - 456 558 IPR045851 -
Vivi1g00516 561 Pfam AMP-binding enzyme C-terminal domain 470 545 IPR025110 -
Vivi1g00516 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 552 - -
Vivi1g00516 561 FunFam Long-chain-fatty-acid--CoA ligase FadD 21 456 - -
Vivi1g00516 561 CDD 4CL 29 551 - -
Vivi1g00516 561 Gene3D - 11 455 IPR042099 -
Vivi1g00516 561 SUPERFAMILY Acetyl-CoA synthetase-like 15 557 - -
Vivi1g00516 561 FunFam 4-coumarate--CoA ligase 2 457 558 - -
Vivi1g00516 561 Pfam AMP-binding enzyme 41 461 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00516 Vivi-Chr1 10844253 10847882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00516 17 523 Monolignol Biosynthesis Gene Families AT1G51680 63.867 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00516 K01904 - gmx:100810418 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00516 1 10844253 10847882 Vivi1g00516 1 10844253 10847882 ECH