Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00514 ATGAATAATTTTCATCCTAATACTTCTCTTCACTTAATCAACCAACCAGAAAATGATAATCATCATCATCATCAACATCACCATCATCATCAACAACATCATCATCTGAATCTAGATCTTGTTCTTGAACCATCTTCTTCATCATCATCCTCTTCACCTATAAGCTCAATGGAGCAAAGGATATTCTCATGCAACTACTGTCAGAGAAAGTTCTACAGCTCTCAAGCTTTAGGAGGCCACCAAAATGCTCACAAACTTGAAAGAACACTTGCCAAAAAGAGTAGAGAGATAACCTCAGCCATGCAATCTTACAATGAATTACCAGAACACCCTTCAAACTATAGCACTTTTGGTCATGGAAACTCTCATCTTGACAATAACCATGGACAAGGAGGTCATTTGATGAGGTATGGTGGAAGAAAAGAATTTAGTTATGGTAATTCTAAGGAAGGTGTGAGTTCTTCTTCTTGGTCAAGGGGTTATAACACTCCTTCTGAACATGTTCAGGAAGATATTAACCAACTTGACTTGTCCTTAAGGCTTTGA 546 0.3755 MNNFHPNTSLHLINQPENDNHHHHQHHHHHQQHHHLNLDLVLEPSSSSSSSSPISSMEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREITSAMQSYNELPEHPSNYSTFGHGNSHLDNNHGQGGHLMRYGGRKEFSYGNSKEGVSSSSWSRGYNTPSEHVQEDINQLDLSLRL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00514 181 MobiDBLite consensus disorder prediction 146 181 - -
Vivi1g00514 181 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 129 IPR044246 GO:0009788
Vivi1g00514 181 MobiDBLite consensus disorder prediction 1 15 - -
Vivi1g00514 181 Gene3D Classic Zinc Finger 45 115 - -
Vivi1g00514 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Vivi1g00514 181 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Vivi1g00514 181 SUPERFAMILY beta-beta-alpha zinc fingers 58 89 IPR036236 -
Vivi1g00514 181 MobiDBLite consensus disorder prediction 147 172 - -
Vivi1g00514 181 FunFam Zinc finger protein 2 40 108 - -
Vivi1g00514 181 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00514 Vivi-Chr1 10791965 10793268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00514 3 181 C2H2 Transcription Factor Family AT5G57520 42.857 1.46e-27 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00514 1 10791965 10793268 Vivi1g00514 1 10791965 10793268 ECH