Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00484 ATGTGTAATAAAGGGTTTCAATGTTTTATCGAGTCTGAAACTGTAATTAATAATCCACAAAACTTTATGATGGATAGTCCCACGGCCGTTCGATCTCCGGCCACCGGTTCGGGTTCCGGTTCGAACGAGGATGGCCGGCGTGTTAAATTTTTGTGTAGTTTTCTAGGTAGTATAATGCCTCGTCCGCAGGACGGGAAGTTGCGTTATGTTGGTGGGGAGACGAGGATTGTGAGTGTTTCGAGAGAGGTTAGCTTTGAGGAGTTGATGGGGAAGATGAGGGAGTTGTATGAAGGTGTTGCTGTGTTGAAGTATCAGCAGCCTGATGAGGATCTTGATGCACTTGTGTCTGTTGTGAATGATGATGATGTGGTTAATATGATGGAGGAGTATGATAAGTTGGGTTCTGGGGATGGGTTTACTAGGTTGAGGATTTTCTTGTTTTCGCAATCGGAGCAGGATGGGTCGGCTCATTTTATTGACGGGGATGATTCGGAGAGGAGGTATGTGGATGCGTTGAATAGTTTGAATGATGCTTCTGAGCTTAGGAGGTTGCAACAAATGGAGTTTCCGATGATTGGTACTACGGTTGAGGATATTCATGTGGGTGATCAGTTTGGGAATCCGATGGGAATGGGAATGGAAAATGGGATTCATAGCCAGAGAAGTGGGGAACTATCTATGTCGCCGTATAATTTGCATCATATGCCGATTCAGCACCAGCAACCTATGGGACAGAGGTATGGTGAAATTGATGCTCAGTGGAATCCTGGTTATTACTCTCCTAGGCATCATGGTCTTAGTCATCATGATTCTAGATCGTCATTGGTTGATTATCCGTCTTCTCCTTCTGCAACGAGATACCGTGTGCCGTTTCCTGAGATGCCAGATAAAGGAATTGATAGAGTGTCGGAAGACTATGCTCGGCATCACGGGAATCACCATCATCCTTTGTATGACAATCAGCCGCAGTATCCTGAGAATGTTGTGTGGCTGCAAACTGGAGCTGCACATGGTGATAAGTCTGGTTTTCAAGGCAATGTTCTTCATAGTTCCCATGCTCATGATGGTAATAATATATGTGAGCACTGTCGAATGAATTTTCAGAGAGCTCAACCACATTTGGAGCATCCTAATATGCTTCCACCGGTTTCTGTTCCGTGTCCAGAATGCCACTCAAGCAGGGAAGCTCTCACTGTGAATGTTGATTCCAAGTTACAGCCTTCGATGTATCCCAATGATGCTCAGAATCATGAGAGGGCTTGTGGTTTGCAGCATCAGAATTCTGGAAGAGTGTCGGATCATTATGTTGGTGATGTTCCGATCATTAATTTCCCTCCTGGACATGGTAGTTTGATTGATGGACATGCTCTTCCTTCCGGTCATGTTCACCAACAGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATACCACATCTAAAAATTCCTCCGTTGGAAGAATCCAGTGCGCAGTATGGAAATGCACCTCCTCCTTATGGAGTAGATAATAATTACGCCATGCCTCGTGGACATGCCCCTGGCTATACTCTTTGGACAAATGGTCCGACTCCAGTTCATATTGGACCACCATACGAAGCAACGACTATGCATCAGCCGGTTGATGGTGTGACAAATGCTGGACTATTCAGAGGAGACGGAAGACCGGGTTTTTTCATTGGACCGGATAGTCCAAATCTTTGGGTTGATTCGTCACAGAAATTCTCTGGTCATGATGGATCAGCCATCCCAGAATACCCTTATGCAAATGCTCCGAAGTTAAATCCAATTCCCACCGGTCACGAAATTCAACACCCGATTATTGTAGATCCCACCATTCATCCCCCACACGACGTAAATGCTGGCACTTGCTTGGAACCTGTGCAGCGGCAAAAATCTTCTCTTAATATCATGCACAATAACGAGGTTTTAAATAATGATGCACATTTGACTGAAGTGATGAATTTACAATCTATAAGTTTGCTTGGAGAAGGAAAAGAGGCAATAAATGAAGACAGGGTTGAAAATGTTAATGTGCAAAGGGTATCCTCTTCAGATCAAAATCAAATTGTTGAAGATGTATGCAACGCTGCTGCTGCTTCTGTTGTTGAGAAACTGATTGATAAGGACCATTCTTCTCCTGGAGATTCTCAGCATTTAGTTGATCAATTCAATATCTTGCCTGAGTTGATTGCTTCTGTTAAAAAGGCTGCGTTGGAATATCACGATGAGGTGAAACCTACAGGTGAAGAGCATGCCGATGGTCAGATGAACAATTTGAATACCCAAGAAGAAACAGAAAAAGAAGTTGAGCCTGTGAATGCTCATGGTGATTTAGAATTAGACACTGAAAATGACCATGTAGATACTTCTAAAATCGAGCCTACAAAAGCTGAGGCAGAAGCAATTGCCAGGGGATTGCAGACTATTAGAAATGATGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGAACTTACGGGGCTGTTTATCATGGGAAATGGAAAGGTTCTGATGTCGCCATTAAGAGAATAAAAGCCAGTTGTTTTTCTGGAAGACCATCTGAACGAGCGAGATTGATTGCAGATTTCTGGAAGGAGGCATTGATGCTTAGTTCATTGCATCATCCTAATGTTGTCTCCTTCTATGGTATTGTTCGTGATGGCCCTGATGGGTCGTTAGCAACAGTAACAGAGTTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGTCGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCACAAAGGCCTGTCTGCAAGATTGGTGATTTAGGTCTTTCGAAGGTTAAACAACACACACTAGTGTCTGGAGGGGTACGAGGAACTTTGCCATGGATGGCACCCGAGCTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTACTCGTTCGGGATAGTCATGTGGGAGTTACTCACCGGCGATGAACCTTATGCGGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAATTCTTTACGTCCTCAAATCCCGTCATGGTGCGATCCTGAGTGGAAGTCTCTAATGGAAAGTTCCTGGGCTTCTGATCCTGTAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGCTGAGGACTATGGCTGCTTCGGTGAATGTGAAATAG 3282 0.4381 MCNKGFQCFIESETVINNPQNFMMDSPTAVRSPATGSGSGSNEDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSREVSFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSAHFIDGDDSERRYVDALNSLNDASELRRLQQMEFPMIGTTVEDIHVGDQFGNPMGMGMENGIHSQRSGELSMSPYNLHHMPIQHQQPMGQRYGEIDAQWNPGYYSPRHHGLSHHDSRSSLVDYPSSPSATRYRVPFPEMPDKGIDRVSEDYARHHGNHHHPLYDNQPQYPENVVWLQTGAAHGDKSGFQGNVLHSSHAHDGNNICEHCRMNFQRAQPHLEHPNMLPPVSVPCPECHSSREALTVNVDSKLQPSMYPNDAQNHERACGLQHQNSGRVSDHYVGDVPIINFPPGHGSLIDGHALPSGHVHQQVGPELGVELFPDQTMAAIPHLKIPPLEESSAQYGNAPPPYGVDNNYAMPRGHAPGYTLWTNGPTPVHIGPPYEATTMHQPVDGVTNAGLFRGDGRPGFFIGPDSPNLWVDSSQKFSGHDGSAIPEYPYANAPKLNPIPTGHEIQHPIIVDPTIHPPHDVNAGTCLEPVQRQKSSLNIMHNNEVLNNDAHLTEVMNLQSISLLGEGKEAINEDRVENVNVQRVSSSDQNQIVEDVCNAAAASVVEKLIDKDHSSPGDSQHLVDQFNILPELIASVKKAALEYHDEVKPTGEEHADGQMNNLNTQEETEKEVEPVNAHGDLELDTENDHVDTSKIEPTKAEAEAIARGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFSGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPSWCDPEWKSLMESSWASDPVERPSFSEISKKLRTMAASVNVK 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00484 1093 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 813 907 - -
Vivi1g00484 1093 SMART serkin_6 820 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00484 1093 SUPERFAMILY CAD & PB1 domains 64 153 - -
Vivi1g00484 1093 PANTHER SERINE-THREONINE PROTEIN KINASE 100 1086 - -
Vivi1g00484 1093 PRINTS Tyrosine kinase catalytic domain signature 1054 1076 IPR001245 GO:0004672|GO:0006468
Vivi1g00484 1093 PRINTS Tyrosine kinase catalytic domain signature 902 915 IPR001245 GO:0004672|GO:0006468
Vivi1g00484 1093 PRINTS Tyrosine kinase catalytic domain signature 1010 1032 IPR001245 GO:0004672|GO:0006468
Vivi1g00484 1093 PRINTS Tyrosine kinase catalytic domain signature 939 957 IPR001245 GO:0004672|GO:0006468
Vivi1g00484 1093 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 908 1093 - -
Vivi1g00484 1093 Gene3D Phosphorylase Kinase; domain 1 805 906 - -
Vivi1g00484 1093 SUPERFAMILY Protein kinase-like (PK-like) 812 1081 IPR011009 -
Vivi1g00484 1093 CDD STKc_MAP3K-like 826 1083 - -
Vivi1g00484 1093 CDD PB1_UP2 51 147 - -
Vivi1g00484 1093 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 67 149 - -
Vivi1g00484 1093 Gene3D - 66 150 - -
Vivi1g00484 1093 SMART PB1_new 62 147 IPR000270 GO:0005515
Vivi1g00484 1093 Pfam Protein tyrosine and serine/threonine kinase 821 1083 IPR001245 GO:0004672|GO:0006468
Vivi1g00484 1093 ProSiteProfiles Protein kinase domain profile. 820 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00484 1093 Gene3D Transferase(Phosphotransferase) domain 1 907 1092 - -
Vivi1g00484 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Vivi1g00484 1093 Pfam PB1 domain 63 148 IPR000270 GO:0005515
Vivi1g00484 1093 ProSitePatterns Protein kinases ATP-binding region signature. 826 847 IPR017441 GO:0005524
Vivi1g00484 1093 MobiDBLite consensus disorder prediction 265 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00484 Vivi-Chr1 10233984 10239423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00484 42 1093 MAP Kinase Kinase Kinase AT5G57610 53.054 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vivi1g00484 PK_Tyr_Ser-Thr 3.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00484 - - tpra:123909448 1857.8