Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00482 ATGGGTAGAGCTCCATGTTGTGACAAAGCTAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACTCTCAAATCCTACATTGAAACAAATGGAACGGGTGGAAATTGGATCGCCCTTCCTCAAAAAATCGGGCTCAAGAGATGTGGAAAGAGTTGTAGACTTAGGTGGTTAAACTACTTGAGACCTAATATAAAACATGGTGGATTTACTGAAGAAGAAGACAACATTATTTGCAGCCTTTATATTAGCATTGGAAGCAGGTGGTCAATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGATATCAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGAAAGCGCAAACAATCGGCGAATAATAACAATAGCTTGATGATGAACCAAAAGGAGACAGATGAGAATTCTTATTCAAATTCTTTGAGTAGTTCAGCTCTTGAAAGACTTCAACTTCATATGCAACTTCAAACCCTTCAAAACCCTTTTGGATTTTACAATAATAACCTTTCTGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGTCTTCAAAACTCTAATAACAACAACACTATGATGCAATTGCAAAGTGCTTTCCCTTCACCACAGGTTGAATGTTTGGAGAATATTAATATTCCTTTGGAGAGTATCAACAATTCGGTTCACTTCGACGCTTCTGAAAACAATGATAATAAGAATCATTATGGTTCAATGGATGCTTCAAGTGTTGCACCAGTTAGAGGAGAAGCTGTTGAGAAGAGTAGTAATGAAGGAATTCAGCAACTGGAAAATGAGCTAGATGAGATTCTCAACAACAGAAATATTATTAGTACTACAATGGAAAATGAGTTTGATTGCTTCAGAGATATGAACAATACTAATGGTTCAAAGGATCAAGGTTTGATATGGTGGTCAAATGAATCAGGTGATACGAAATCGGGATCGTCGAACTCGTGGGATTCGTCGACTAATCTTATGCAAGAAGGGATGTTCCAAGGTTATGAGCTAGGTTATGGTTTGTAA 1053 0.3713 MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSANNNNSLMMNQKETDENSYSNSLSSSALERLQLHMQLQTLQNPFGFYNNNLSVWPKLHPSQEKMIQISLQNSNNNNTMMQLQSAFPSPQVECLENINIPLESINNSVHFDASENNDNKNHYGSMDASSVAPVRGEAVEKSSNEGIQQLENELDEILNNRNIISTTMENEFDCFRDMNNTNGSKDQGLIWWSNESGDTKSGSSNSWDSSTNLMQEGMFQGYELGYGL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00482 350 Gene3D - 7 68 - -
Vivi1g00482 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi1g00482 350 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vivi1g00482 350 MobiDBLite consensus disorder prediction 122 144 - -
Vivi1g00482 350 CDD SANT 71 111 IPR001005 -
Vivi1g00482 350 Gene3D - 69 146 - -
Vivi1g00482 350 PANTHER OS09G0431300 PROTEIN 1 264 - -
Vivi1g00482 350 FunFam Transcription factor RAX3 7 68 - -
Vivi1g00482 350 Coils Coil 262 289 - -
Vivi1g00482 350 FunFam Transcription factor MYB36 70 142 - -
Vivi1g00482 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi1g00482 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi1g00482 350 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi1g00482 350 CDD SANT 16 62 IPR001005 -
Vivi1g00482 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi1g00482 350 SMART sant 13 64 IPR001005 -
Vivi1g00482 350 SMART sant 67 115 IPR001005 -
Vivi1g00482 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vivi1g00482 350 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00482 Vivi-Chr1 10204823 10206849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00482 1 243 MYB Transcription Factor Family AT5G57620 59.160 3.75e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g00482 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00482 K09422 - gmx:100783440 406.371