Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00470 ATGGGTATTGAAAGAACAGGACTTAAGAGTTTTCGAAGCGGATGGAGTGTGCCACCTAAGCTTTGTGATTCTTGCAAGCTTTCTTCTGCCGCGCTTTTTTGCCATTCTGATTCCGCGTTTCTGTGCATCAATTGTGATTCCAGGATTCATTCTGGTAACAAACTCTCCACGCGCCATGAGCGCGTCTGGATGTGCGAAGTTTGTGAACAAGCACCAGCCTCCGTCACGTGTAAAGCTGACGCCGCTGCTCTCTGCGTCACGTGCGATTCTGACATCCACTCAGCAAATCCACTCGCGCGCCGTCACGAGCGCGTTCCCGTCGAACCTTTCTTCGATTCTGCCGAATCCGTCGTGAAATCCTCCTCCGCCGCTGCTGCAGCCGCCGCTTCGTTCAATTTCGTCGTCCCTTCCGACGACGGATTCAGCCACGAGGACACCGATGCATCTGCGTGGCTGATTCCGAATCCGAATTTCGGATCTAAACTCGCCGAAACTCCAGATATCAAAACCAGAGAGATGTTTTTCTCCGATATGGATCCGTTTCTCGATTTCGATTATTCAAACAACTTCCAGAACAATAATTGCAACGCGATAAACGATAGCGTAGTTCCGGTTCAAACCAAACCTACTCCGGCACCGATGATGAACCATCATAACTCAGAAGCTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCTCGTTTAATTATCCATCACATTCTATTAGCCAAAGCGTTTCTTCTTCTTCACTTGACGTCGGAGTGGTGCCGGACGGGAACATGGTATCGGAGTTTTCATATACTTTCGGTTCGGAATCAATGGTGTCAGGTGGTGTGAATAGCAATAGCAACAACCAAGGGGTGCAAGGAGCAACTCAATTATGTGGAATAGACCGTGAAGCGAGGGTTCTGAGATACAGAGAGAAGAGAAAGAACCGTAAATTCGAAAAAACAATTCGTTACGCTTCGCGAAAAGCCTATGCAGAAACCCGGCCTAGAATCAAAGGCCGGTTTGCGAAACGAACCGAAATTGACTCGGATGTAGACCGTCTCTATAACCCTGCAGAACCTCTCACCGTTCCCGGTTCACTTTTAATCGACTCTCCGTACGGTGTCGTTCCGACGTTTTAG 1134 0.4859 MGIERTGLKSFRSGWSVPPKLCDSCKLSSAALFCHSDSAFLCINCDSRIHSGNKLSTRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSSAAAAAAASFNFVVPSDDGFSHEDTDASAWLIPNPNFGSKLAETPDIKTREMFFSDMDPFLDFDYSNNFQNNNCNAINDSVVPVQTKPTPAPMMNHHNSEACFDIDFCRSKLSSFNYPSHSISQSVSSSSLDVGVVPDGNMVSEFSYTFGSESMVSGGVNSNSNNQGVQGATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPAEPLTVPGSLLIDSPYGVVPTF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00470 377 CDD Bbox1_BBX-like 65 107 - -
Vivi1g00470 377 CDD Bbox1_BBX-like 21 64 - -
Vivi1g00470 377 SMART bboxneu5 17 64 IPR000315 GO:0008270
Vivi1g00470 377 SMART bboxneu5 65 107 IPR000315 GO:0008270
Vivi1g00470 377 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Vivi1g00470 377 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Vivi1g00470 377 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Vivi1g00470 377 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Vivi1g00470 377 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Vivi1g00470 377 Pfam CCT motif 300 342 IPR010402 GO:0005515
Vivi1g00470 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 354 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00470 Vivi-Chr1 9983818 9985578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00470 1 377 C2C2-CO-like Transcription Factor Family AT5G57660 52.850 1.07e-118 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi1g00470 zf-B_box 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00470 - - cam:101510742 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00470 1 9983818 9985578 Vivi1g00470 1 9983818 9985578 ECH