Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00469 ATGGAACTTCCTTCACCTTCTACAATACTTATTGGCCTCTCCTTAGATTCAAATGATAGCAAGGAGCTTCTTTCATGGACAATGAGAGTTCTGGCCAAACCAAATGATACTATTGTTGCAGTGCATGTTCTTGTTGGTGAGAATATGAAGAAAAGTGTATCTGTTAGAAGAAGACAATCACATCTTAGACAAGCAAAAGCATATGTTATATCTGTGCTCGGAGAATTCGCGCAGACGTGTTGGTCTAAACAGATTAATTTGGAGGCTAAAGTGGCAATGAGTTCCACAATAGGTGCTGGTTTAGTGAAGGAAGCCGAGTTAATTTCGGCCGATTTTCTTCTTCTTCGCGGAACCTCTAAAGGAATTGCCAAGTATTGCTTTGATCATTTACATGGAAGTTGCACAATGGTCTCAGTTGGTGCTAGAAGCACAATGACAGAAATGAATGCGCAGAACAGTTCGCCGAGAACAGTACTAGATCGATTAGAGGGACAGTCGAATAGTACAGAAGACGATACTTTTAGCACGCGAGCATCGAGCATGATATATACACCTTCATCTGATTCGAAGATTAAGAGAAAATCGAAGTTGAGAAAATCGCAATTCTCATTCAGGTTCATAATGTCATTCCTTGGTTCACCATTCAGATTAAAGAGCTTCAATGTGTCGAAAAATGAAATACATCATCAACCCTTGTTGAAGTGCTTCAGCTATGAAGATATTTGCAATGCTACTGATCACTTTCACCAAGATAATTTGGTTGGTAGAGGAGGGTACTCAGAAGTATATAAAGGTGATCTTTGTGATGGAGAAACCATTGCTGTGAAGAGGTTAGCCAAAGACAACAAAGATCCAAACAAGGAGAAAGAGTTTCTTATGGAGTTGGGTGTTATTGGACATGTCTGTCATCCGAATACGGCGAGCTTATTAGGCTACTGCTTTGAAAATGGACTCTATCTGATTTTCAGTTACTCTCAAAATGGAAACTTGTCAACTGCGTTGCATGGTAAAGCAGGAAATTCACTTGACTGGCCAATAAGGTACAAGATTGCTATTGGAGTTGCAAGAGGTCTCCATTATCTTCATAAATGTTGCAAACATCGAATAATTCATCGTGACATTAAAGCCTCCAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTACAGATTTTGGACTTGCAAAGTGGCTTCCTAACAAATGGACTCACCATGCTGTAATCCCGGTGGAGGGGACCTTTGGATATTTAGCACCCGAGGTTTTTATGCATGGGATTGTAGATGAGAAAACTGATATTTTCGCATTCGGTGTTCTTCTTTTGGAGATCGTAACCGGAAGAAGACCTGTTGATTCATCAAAGAAAAACATTCTCCTATGGGCAAAGCCTCTAATGGAATCAGGAGATATTGCTGAGCTGGCTGATCCAAGAATGGAAGGTAAATATGATACCGAAGAATTGCATAGGGTAATCCTAACAGCTTCATACTGTGTCAGACAAACTTCCACTTGGCGTCCTGCCACGACCGAGGTGTTGGAGATGTTAACTAGTGGCCAAGACTATAAAATCGGAAATAGTGGGAGAATTGCAAACTTCAGTTCTGATGAATTGGATGATTACTCTATGGTTTTTGGATACAATGTACCTTCGGAAATATCGCTAGAGGATTATTTGTGA 1677 0.4025 MELPSPSTILIGLSLDSNDSKELLSWTMRVLAKPNDTIVAVHVLVGENMKKSVSVRRRQSHLRQAKAYVISVLGEFAQTCWSKQINLEAKVAMSSTIGAGLVKEAELISADFLLLRGTSKGIAKYCFDHLHGSCTMVSVGARSTMTEMNAQNSSPRTVLDRLEGQSNSTEDDTFSTRASSMIYTPSSDSKIKRKSKLRKSQFSFRFIMSFLGSPFRLKSFNVSKNEIHHQPLLKCFSYEDICNATDHFHQDNLVGRGGYSEVYKGDLCDGETIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTASLLGYCFENGLYLIFSYSQNGNLSTALHGKAGNSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIFAFGVLLLEIVTGRRPVDSSKKNILLWAKPLMESGDIAELADPRMEGKYDTEELHRVILTASYCVRQTSTWRPATTEVLEMLTSGQDYKIGNSGRIANFSSDELDDYSMVFGYNVPSEISLEDYL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00469 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vivi1g00469 558 Pfam Protein kinase domain 248 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00469 558 PANTHER OS08G0249100 PROTEIN 60 520 IPR046958 -
Vivi1g00469 558 FunFam Putative receptor-like serine/threonine-protein kinase 215 324 - -
Vivi1g00469 558 Gene3D Phosphorylase Kinase; domain 1 212 324 - -
Vivi1g00469 558 SMART serkin_6 248 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00469 558 ProSiteProfiles Protein kinase domain profile. 248 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00469 558 SUPERFAMILY Protein kinase-like (PK-like) 229 515 IPR011009 -
Vivi1g00469 558 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Vivi1g00469 558 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 325 529 - -
Vivi1g00469 558 Gene3D Transferase(Phosphotransferase) domain 1 326 530 - -
Vivi1g00469 558 Gene3D HUPs 3 136 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00469 Vivi-Chr1 9940757 9943682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00469 236 554 Trihelix Transcription Factor Family AT1G70460 39.763 1.34e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi1g00469 Pkinase 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00469 - - gmx:100787158 888.641