Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00468 ATGGGATCTTCTCTCAGTTGCTGCGGTTCTGAGAAGGTCGATGAAGTGCCAACATCTTTTGGTGTAGCTAGCAATTCTTGGAGAATTTTCACATACAAGGAGTTGCATACAGCTACGAATGGGTTCAGCGATGATTATAAGCTCGGTGAAGGTGGATTTGGAAGTGTCTATTGGGGAAGAACCAGTGATGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCAATGAATTCAAAGGCTGAGATGGAATTTGCTGTAGAAGTTGAAGTACTTGGAAGGGTCAGGCACAAGAATTTATTAGGTCTTAGAGGCTATTGTGTTGGCGATGATCAGCGCCTTATTGTCTACGATTACATGCCGAATCTGAGTCTTCTTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTCCAACTCAACTGGCAAAAGAGAATGAGCATTGCAATTGGCTCGGCCGAAGGCATTTTGTACTTGCATCATGAGGTCACACCACACATTATCCATAGGGACATCAAAGCAAGCAATGTCTTACTTGATTCAGATTTCGTGCCTCTGGTTGCTGATTTTGGTTTCGCGAAGCTTATACCAGAAGGAGTTAGCCACATGACAACGCGTGTTAAGGGTACGTTAGGATACTTAGCGCCCGAGTATGCAATGTGGGGGAAAGTTTCTGAGAGTTGTGATGTTTATAGCTTTGGAATTCTTCTGCTAGAGCTAGTAACTGGTAGAAAGCCGATAGAAAAGTTACCTGGCGGGCTTAAGAGAACGATAACCGAATGGGCTGAGCCGTTGATAACGAAAGGAAGGTTTAGGGATATGGTTGATCCGAAACTTAGAGGAAACTTTGATGAGAATCAAGTTAAGCAAACGGTTAATGTGGCTGCACTTTGTGTGCAAAGCGCGCCTGAGAAACGACCGAATATGAAGCAAGTTGTTAGTCTTTTGAAAGGACAAGAAGCTGATCAAGGGAAAGTGGTGACTAAGATGAGAATAGATAGTGTTAAGTATAATGCGGAGTTATTGGCACTTGATCAACCTAGTGATGATGATGATTATGATGGAAATAGTAGCTATGGTGTTTTTAGTGCTATTGATGCTCAGAAGATGAAGGATCCTTACAAGCGCGGCGATAACAGGAAAATTTGA 1140 0.4298 MGSSLSCCGSEKVDEVPTSFGVASNSWRIFTYKELHTATNGFSDDYKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQKRMSIAIGSAEGILYLHHEVTPHIIHRDIKASNVLLDSDFVPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITKGRFRDMVDPKLRGNFDENQVKQTVNVAALCVQSAPEKRPNMKQVVSLLKGQEADQGKVVTKMRIDSVKYNAELLALDQPSDDDDYDGNSSYGVFSAIDAQKMKDPYKRGDNRKI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00468 379 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vivi1g00468 379 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 331 - -
Vivi1g00468 379 SUPERFAMILY Protein kinase-like (PK-like) 23 313 IPR011009 -
Vivi1g00468 379 Gene3D Transferase(Phosphotransferase) domain 1 118 336 - -
Vivi1g00468 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vivi1g00468 379 CDD STKc_IRAK 48 315 - -
Vivi1g00468 379 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Vivi1g00468 379 ProSiteProfiles Protein kinase domain profile. 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00468 379 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00468 379 Pfam Protein tyrosine and serine/threonine kinase 47 313 IPR001245 GO:0004672|GO:0006468
Vivi1g00468 379 Gene3D Phosphorylase Kinase; domain 1 15 117 - -
Vivi1g00468 379 PANTHER OS01G0253100 PROTEIN 24 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00468 Vivi-Chr1 9927842 9929763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00468 1 366 Trihelix Transcription Factor Family AT1G70460 42.593 7.78e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vivi1g00468 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00468 - - gmx:100783365 664.84