Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00465 ATGATGACCAAGTCCTTGTGTTTTTCATGTTTACTAATATTTTTCCTTTTGGTTGTACAAATGCAAAAGGTGAGTCCTACGTCAAACGAAGGAATGATTAAGTTGAGAGTTGGAGTTCCTAAGAAAGACGGTTTTACCCAATTTCTAAAAGTAGTTTGGAATTCTCGTGAAAACAAGTATAACGTGTCTGGTTTTTGCATGGATATTTTCAATGCCGTAGTGAACAAGTTAACTTTCAAAGTTTCTCTACAAATTGAACCTTATGAATTTGAAAACACTGCTGCAACATACGATTCACTTATCCAACAAGTCCCAACAAAGTATGACGTTGCGGTGGGGGACATAACAATCGTGGCGAACCGTTCACAATTTGTAGATTTCACACTACCATTTACAGAATCAGGAGTTAGAATGTTAGTTTCAGTTCAACATGGAAGGCAGCAAACCATGTGGATTTTTGTGCAACCCTTCAGCTGGCAGCTTTGGTTGAGCATACTCTTAATCTCCATGCTTATAGGATCTGTGTTACTCATCATGGAAAGAAATGTACAAACCCTACACGAAGAGCATTCCTCGTTTAAAAAACAGCTCACTGCTATAACCATGTTATGGTTTCCCTTATCACAAGCTGTTCTTCCCGAAAGAAAAGTGGTCGCTAATAACTGCTCGATATTTGTGTTGATGGTTTGGCTTCTGTTGGCGTTTGTCCTAATGCAAAGTTATACTGCAAACTTGACATCGATATTGACCTTAGATCAGTTGCAACCTAGTTTTCTCGACGTAAACGATCTAAGGAAAGGGGATCATTATGTTGGATATCAAGCTGGTTCTTTTGTGTATGATTTATTAGTACAACAATTGAAGTTTAATCCATTGAAGTTGAAAGCATATAGCACCATTTCTAGCTATCATGATGCTTTAAAGCTTGGAAGCAAGAAAGGGGGTGTCACAGCTATATTTGATGAAGTGCCCTACCTTAATGTGTTTCTTCAAAAGGTTAAATCCAATTACATCATAGCTGGTCCAACCTATAGAACTGGTGGATTTGGTTTTGCATTTCCTTTGAATTCCAATCTTACTGCTCACTTTTCAAGAGCAATATTGAGTGTGACACAAAAACATGAATTTATGGAAAAGATAGAGAAAAAATATTTTGGAAAGAGTATTGAAGGTCCACAAATATCTTCAGCTTCACCAAGTCTCACCCTTCACAGCTTTTCAGGGCTCTTCTTAATCACCAGCATTTCTACCTTATTGGCGTTATTTGTCTCGGAAACTTTTTGGTTTTGGCAAAGATCCATTTTAGTGATCAAAGAGTATTGTCGGAGATATTTCTTTCATTCACCACCTCCTACTCAAGAAATAATCAATCAACAAATGACTACTCCTTCCCGTCCTTATTATAAAAAAAGTCTTACTTTTTGA 1425 0.3712 MMTKSLCFSCLLIFFLLVVQMQKVSPTSNEGMIKLRVGVPKKDGFTQFLKVVWNSRENKYNVSGFCMDIFNAVVNKLTFKVSLQIEPYEFENTAATYDSLIQQVPTKYDVAVGDITIVANRSQFVDFTLPFTESGVRMLVSVQHGRQQTMWIFVQPFSWQLWLSILLISMLIGSVLLIMERNVQTLHEEHSSFKKQLTAITMLWFPLSQAVLPERKVVANNCSIFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLDVNDLRKGDHYVGYQAGSFVYDLLVQQLKFNPLKLKAYSTISSYHDALKLGSKKGGVTAIFDEVPYLNVFLQKVKSNYIIAGPTYRTGGFGFAFPLNSNLTAHFSRAILSVTQKHEFMEKIEKKYFGKSIEGPQISSASPSLTLHSFSGLFLITSISTLLALFVSETFWFWQRSILVIKEYCRRYFFHSPPPTQEIINQQMTTPSRPYYKKSLTF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00465 474 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 432 IPR015683 -
Vivi1g00465 474 SMART GluR_14 34 387 IPR001320 GO:0015276|GO:0016020
Vivi1g00465 474 Gene3D - 150 288 - -
Vivi1g00465 474 Gene3D - 31 149 - -
Vivi1g00465 474 Pfam Bacterial extracellular solute-binding proteins, family 3 57 387 IPR001638 -
Vivi1g00465 474 Pfam Ligand-gated ion channel 388 415 IPR001320 GO:0015276|GO:0016020
Vivi1g00465 474 CDD GluR_Plant 34 385 - -
Vivi1g00465 474 SUPERFAMILY Periplasmic binding protein-like II 2 388 - -
Vivi1g00465 474 FunFam Glutamate receptor 2.7 30 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00465 Vivi-Chr1 9799061 9801038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00465 34 424 Ion Channels AT2G29100 43.719 5.59e-81 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00465 K05387 - tpra:123903997 661.759