Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00458 ATGCTTTCAAGATCTTGTTTAGGTTTATTAAATCACGTAACAACAAACGATTACATAGAACAACCCACCACTGTTCAGAAACTGATTGCGCCGGTGACCGGAGAAGATGAACGGAACTTTCAACAAAGTACCGTTTCCGTTTCATCATCGCCGGTTTCTCGAGAACGTAGAAGAATGATAATAGTAGCGAATCAGTTACCGATACGCGTTGTGAAAGCTTCTGATAAAGATGAAAAGAAGTTGAAATTTGAATGGGATGTTGATAGTATATATTTTCAGCTGAAAGATGGTTTCTCTGAGAAAGTTGAGGTTTTGTATGTGGGTTCTTTGAAAGCGGAGATTGATCAATCGGAACAAGAGGAAGTTGCTCAGGTTTTGTTTGAGAAGTTTCGTTGCGTTCCGACTTTTTTACCTTCGGAGATTCATAATAAATTCTACCATGGTTTTTGTAAGCATTATCTATGGCCGTTGTTTCATTACATGCTTCCTGTGTCGAAGAGTCAAGGTGCGCGTTTTGATCGGTCTCAGTGGCTTGCTTATGTTTCAGCGAATAGGATTTTCGCTGACAAGGTTACTGAGGTGCTTAACCCTGATGAGGATTATGTTTGGGTTCATGATTATCATCTGATGATTTTGCCAACTTTCTTGAGGAAGAGGTGTCCTAGAGTGAAATTGGGGTTTTTTCTGCATAATACGTTTCCTACCTCGGAGATTTATAGAACATTGCCGGTTCGTGAGGAGATTCTGAGGGGGTTTTTGAACTGTGATTTGATTGGGTTTCATACTTTTGATTATGCTAGACATTTTTTGTCTTGTTGTAGTAGGATGTTGGGGTTGGATTATGAGTCCAAAAGGGGTTACATTGGACTTGATTACTTTGGGAGAAATGTTACTATTAAGATTTTACCTGCTGGGATTCATATGGGTCTTCTTGAGTCGGTGTTGTCGTTGCCAGATACCGCGACAAGGGTTAAGGAGTTGAAGGAGGAGTTTGAAGGGAAGGTTGTGATTTTGGGGGTTGATGATATGGATTTGTTCAAAGGGATTGGGTTGAAGTTTTTGGCATTGGGAAAGCTTTTGGAGGTGAATGAGAAAGCAAGGGGTAAAGTTGTTTTGGTTCAGATTCTGAATCAAGCCAGGAGTAAAGGAAAAGATATTCAGGACTTGAAATTCGAGATTGAAGCCATTGCGAAAGAGATTAATGATAAATATGGTGATAAACAATCTGGGTATAGGCCAATTGTTTGCGTAAATGGGCCCGTTTCAACTCAGGAGAAGGCTGCGTACTATGCGATATCAGAATGTTGTATTGTAAATGCTGTGAGGGATGGGATGAATTTGATGCCATATGAGTATACTGTTTGCAGACAAGGAAGTGTTGAATTGGATAAAGCACTGGGGGTGGAAAATGACGAGGCTAAAAAGAGTGTTATCATTGTTTCCGAGTTCATTGGTTGTTCTCCTTCGCTCAGCTGTGCGATTCGGGTGAATCCATGGAACATTGATGATGTTTGTGAAGCAATGAACTCGGCTATCAGAATGGTGGATGCTGAGAAGCAATTGAGACACGAGAAGAATTATAAGTATATAAGCTCTCATGATGTTGCTTATTGGGCTAAGAGTTTTGATCAAGATTTAGAGAGAGCTTGTAGGGAGCATTATGTGAAGAAGTGGTTGGATGTTGGATTGGGACTTAATTTTAGAATCATTGCTTTGGATCCTAGTTTTAAGAAGCTTTCTGTTGATTACATTGTCTCTGCTTATAGAGATACAAAGAGTAGGTTGATCCTTTTGGATTATGATGGTACCATGATGCCTCAGGGATCACTTGACAAAACCCCTAGCTCGGATGTTATCTCTCTCTTAAATGGCTTATGCAGTGATCCCAAAAATGTAGTTTTCATTGTTAGTGGCAGGGATAGAGAATGCCTTAGCAAGTGGTTTTCGCCCTGTGATAAACTTGGTCTCTCTGCAGAACATGGTTACTTCACTAGGTGGAGCAAGGATTCTCCTTGGAAAACTTGTGCATTGGCATCGGATTTTGATTGGAAAAATACAGTAGAACCGGTGATGGCGCTTTATACAGAAGCAACTGATGGTTCCTTCATTGAAAAAAAGGAAAGCGCAATGGTTTGGCAACATCAAGAAGCAGATCCTGATTTTGGATCATGGCAGGCTAAAGAGCTTCTTGATCACCTGGAGAGCGTGTTAGCTAATGAACCTGTAGTAGTTAAAAGGGGACAACATATTGTTGAAGTAAAGCCTCAGGGTGTGAACAAAGGTATAGTGGTGGAAGAGCTTATATCAACCATGAGGAACGAAGAGAAGTCACCGGATTTTCTCCTATGCATAGGAGATGATAGATCAGATGAAGATATGTTCGAAAGCATTGCCAATTTAGCTTTACCAACCATATCACAAGTATTTCCATGCACAGTTGGTCAGAAGCCAAGTAGGGCCAAATACTATCTAGATGATACTCCTGATGTTATCACATTGCTCGAAGGACTTCTGCGGCATCAGCAGCAGCGGCAGATTAATCACAATGTAGAATGA 2556 0.4069 MLSRSCLGLLNHVTTNDYIEQPTTVQKLIAPVTGEDERNFQQSTVSVSSSPVSRERRRMIIVANQLPIRVVKASDKDEKKLKFEWDVDSIYFQLKDGFSEKVEVLYVGSLKAEIDQSEQEEVAQVLFEKFRCVPTFLPSEIHNKFYHGFCKHYLWPLFHYMLPVSKSQGARFDRSQWLAYVSANRIFADKVTEVLNPDEDYVWVHDYHLMILPTFLRKRCPRVKLGFFLHNTFPTSEIYRTLPVREEILRGFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYFGRNVTIKILPAGIHMGLLESVLSLPDTATRVKELKEEFEGKVVILGVDDMDLFKGIGLKFLALGKLLEVNEKARGKVVLVQILNQARSKGKDIQDLKFEIEAIAKEINDKYGDKQSGYRPIVCVNGPVSTQEKAAYYAISECCIVNAVRDGMNLMPYEYTVCRQGSVELDKALGVENDEAKKSVIIVSEFIGCSPSLSCAIRVNPWNIDDVCEAMNSAIRMVDAEKQLRHEKNYKYISSHDVAYWAKSFDQDLERACREHYVKKWLDVGLGLNFRIIALDPSFKKLSVDYIVSAYRDTKSRLILLDYDGTMMPQGSLDKTPSSDVISLLNGLCSDPKNVVFIVSGRDRECLSKWFSPCDKLGLSAEHGYFTRWSKDSPWKTCALASDFDWKNTVEPVMALYTEATDGSFIEKKESAMVWQHQEADPDFGSWQAKELLDHLESVLANEPVVVKRGQHIVEVKPQGVNKGIVVEELISTMRNEEKSPDFLLCIGDDRSDEDMFESIANLALPTISQVFPCTVGQKPSRAKYYLDDTPDVITLLEGLLRHQQQRQINHNVE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00458 851 CDD GT20_TPS 58 547 IPR001830 GO:0003824|GO:0005992
Vivi1g00458 851 Pfam Trehalose-phosphatase 597 827 IPR003337 GO:0003824|GO:0005992
Vivi1g00458 851 NCBIfam trehalose-phosphatase 592 838 IPR003337 GO:0003824|GO:0005992
Vivi1g00458 851 Gene3D - 723 850 IPR023214 -
Vivi1g00458 851 Gene3D - 593 711 IPR023214 -
Vivi1g00458 851 Gene3D Glycogen Phosphorylase B; 314 531 - -
Vivi1g00458 851 NCBIfam HAD-IIB family hydrolase 595 796 IPR006379 -
Vivi1g00458 851 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 51 312 - -
Vivi1g00458 851 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Vivi1g00458 851 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 42 837 IPR001830 GO:0003824|GO:0005992
Vivi1g00458 851 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 551 - -
Vivi1g00458 851 FunFam Alpha,alpha-trehalose-phosphate synthase 314 531 - -
Vivi1g00458 851 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 849 - -
Vivi1g00458 851 CDD HAD_TPP 595 830 - -
Vivi1g00458 851 Gene3D Glycogen Phosphorylase B; 47 313 - -
Vivi1g00458 851 Pfam Glycosyltransferase family 20 58 547 IPR001830 GO:0003824|GO:0005992
Vivi1g00458 851 SUPERFAMILY HAD-like 594 838 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00458 Vivi-Chr1 9582692 9586019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00458 52 845 Trehalose Biosynthesis Gene Families AT2G18700 67.786 0.0 1146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00458 K16055 - gmx:100810498 1324.3