Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00452 ATGCCTCCTCTTCCCCACCATTCCCATGGCGGCGACCCCTCGCCCAAACCCAACCCCACCCTCCTCTCCCTCTTCCTCAAACCCATCATCATGCTCCTCCTCACCTCCCTCTTCTTCCTCTTCCTCGGCTTCGCCGCTTTCCTCCTCCTCAACCTCTTCCTCCTCGCCGGCGCCCTCCACCGCCTCCGCTTCCGTCCCACCCCTTCCCGCCGCCTCCAATCCCCCACCTCCCCCTTCCTCCCCCACGAAATCAACAAACTCCCCAACTTCCGCGTCCCCAAAACCACCACTCCCGGACCCGATTCCCGCTGCGCCGTTTGCCTCGACGGGTTCCGCCACAATCAATGGTGTCGAAACCTCGCCGCGTGTGGTCACGTCTTTCACCGGAGATGCATTGACTCGTGGCTCGTCAAAGTTGCGACGTGTCCGACTTGCCGGACACCTGTTCGATCAAATGCTGAAACGAATCTTGTAACGGAAGGTTCTTCGCAATTTTGGAATTGTTCAAATCACAATAATGGGTTCGCCATTTTATAG 537 0.5829 MPPLPHHSHGGDPSPKPNPTLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPSRRLQSPTSPFLPHEINKLPNFRVPKTTTPGPDSRCAVCLDGFRHNQWCRNLAACGHVFHRRCIDSWLVKVATCPTCRTPVRSNAETNLVTEGSSQFWNCSNHNNGFAIL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00452 178 SMART ring_2 104 145 IPR001841 -
Vivi1g00452 178 Pfam Ring finger domain 103 146 IPR001841 -
Vivi1g00452 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 155 IPR013083 -
Vivi1g00452 178 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vivi1g00452 178 SUPERFAMILY RING/U-box 83 152 - -
Vivi1g00452 178 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00452 Vivi-Chr1 9285865 9292277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00452 1 173 C3H Transcription Factor Family AT2G18670 37.363 2.15e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00452 - - pvu:PHAVU_003G150700g 173.326