Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00450 ATGGGAAGAACTTTTCTACCATATAAAGATGAAACCTTTATGCCTCCATTACCACAGCCACCTTATTCTTTTCATTTTCATCCCAACCCATCACCATTTCCACCCATCACAGTTTCATCTCTTCGATCTGACAATTTCAGTTCAAATGATAAATCCTTGAAGGTTAGTCCAAGTATTCTCCTAATAATCATCATTCTAGCCATAGTTTTCTTCGTTTCTGGTTTGCTTCATCTCTTAGTGAGGTTCCTATGGAGGCCTCAGGATAGAGACAGTGAGGATTTGGATGATGTTACTGCTCTTCAAGGGCAGTTGCAGCAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAGTCTTTCATTGATACTACTCTTCCTGTGTTTCTTTATAAGGCTATTATTGGATTGAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCTTGAAGATAAGCTTAGGTTGTTGCCCAAATGTAGTCATGCTTTTCATATGGACTGTATTGATACTTGGCTTTTGTCTCATTCTACTTGTCCTCTTTGTAGAGCTAACTTGCTTCATGATTTCAACACAAACAGTAATTGTTCACCTATTGTTCTTGTTCTAGAATCTGGTAGTGATAGTTCTAGGGAAATTGTTCCAGAAAGAGATACTGTTACCGTTACCGCTACCGCTACCGCTACTGCTATAGGTTCAGATAGTGTTCTTGGTAGGACTAGTTCTGTTATTTCAACGAATTCGGTTCTTGGTTATCGCGGAGACAGTGAATTCGGAGGTGATTCGGCTTCGGTTGAAAACCTTCCTAAGCTGAATGTTGGTGTGGAGAAAGTTGTGACTGTTAAGCTTGGGAAGTATAGGAATGTTGATGGTGTTGGTGGTGGTGGAGGAGGGGAAGGAAGTAGTAGCAACAATGTGGATGATAGGAGGTGTTTTTCTATGGGTTCGTTTGCGTATATTATGGACGAAACATCTTCGTTGCAGGTACCGATTAGAACTCCGATGAAGACGAAATCGAGTAAGAAGAAAACTGTTTTGCCTTTGATTCCAGGTCATAGGCCTGCAATGTCGGAATGTGATTGCGAATCAAGGAGAGAGTTCAAGTTTACAAGCTTTGATTCAACTAGAGGAGTAGTTGATGATTTTGCAGGTATTGGAAAGAGTCGAAAAGAGAGTTTTTCTATATCGAAGATTTGGCTAAGAGGGAAAAAAGATAAGACTAATGGTGATGCTGCGGATTCATCTCGAAGAACTGTTTCATTTCGGTTTCCATTACAAAGTAATGATGATTTGAAGGGTAAGAGTTTGAGGTTTCATGCAAGGAGTGCAGTTTCTGAGATGGATTTTGGAGGAAGTGAATTTGGTGGTTATGATGAAGAGAATCAAAGTTGTTATAGTATGGATTCGTCTCAAGCTAGAGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTTACTGGAAAACAGAATAAGGTTGTTCATTCTTCAACTGCTTCTGCTTCTACTTCTACACTTTAG 1518 0.3986 MGRTFLPYKDETFMPPLPQPPYSFHFHPNPSPFPPITVSSLRSDNFSSNDKSLKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPQDRDSEDLDDVTALQGQLQQLFHLHDAGVDQSFIDTTLPVFLYKAIIGLKNPFDCAVCLCEFELEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRANLLHDFNTNSNCSPIVLVLESGSDSSREIVPERDTVTVTATATATAIGSDSVLGRTSSVISTNSVLGYRGDSEFGGDSASVENLPKLNVGVEKVVTVKLGKYRNVDGVGGGGGGEGSSSNNVDDRRCFSMGSFAYIMDETSSLQVPIRTPMKTKSSKKKTVLPLIPGHRPAMSECDCESRREFKFTSFDSTRGVVDDFAGIGKSRKESFSISKIWLRGKKDKTNGDAADSSRRTVSFRFPLQSNDDLKGKSLRFHARSAVSEMDFGGSEFGGYDEENQSCYSMDSSQARAPSFARRTLLWLTGKQNKVVHSSTASASTSTL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00450 505 CDD RING-H2_EL5-like 140 183 - -
Vivi1g00450 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 399 - -
Vivi1g00450 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 191 IPR013083 -
Vivi1g00450 505 SMART ring_2 141 182 IPR001841 -
Vivi1g00450 505 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vivi1g00450 505 FunFam E3 ubiquitin-protein ligase ATL6 103 189 - -
Vivi1g00450 505 Pfam Ring finger domain 140 183 IPR001841 -
Vivi1g00450 505 SUPERFAMILY RING/U-box 128 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00450 Vivi-Chr1 9266565 9268548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00450 54 500 C3H Transcription Factor Family AT2G18650 45.923 1.63e-101 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00450 - - gmx:100797283 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00450 1 9266565 9268548 Vivi1g00450 1 9266565 9268548 ECH