Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00443 ATGCGAAATTTGAGTTCACTCAAGAGAGAATTCTTAAAGAAATGGGTAAAGGGTCTAAGAAAATACAACTCACAAAAGAAGAACATGAACTTGTTGGAGAGAAAGAAAGCCATAAAGCTTTCCGCAGATTTAGCCATGGCTTCCACTAAAGACAAAACTACCCTTTGGAGAAAAGCATTTATTGCAAACACTTCAACAAGCATACATGAACAAGATACATCAACATCATCACCACAAAAGAAGAAGATAACAAAGAAAAACTCGACGAATTCGTGTCGGCTTTATCGAAAAAGGATAATTGGAAGCAGAAAGATCTTGAGAAGACATCATGTGAAACAAAGAGTGGAGGCAAGTTTTATTGCAACCAAGTTGGTTAAGAAAAGAACAAGAACACTCAAGAGTTTGTTACCTGGTGGAAAATTCATGGATGATGCTTGTTTGGTTGATGAAACCCTAGATTATATACAATCTTTGAAAGCTCAAGTTGAAGTCATGAGATGTCTTGTTACTGCCTCAGAGCTCTTCATAAATCCACCGTAA 540 0.3667 MRNLSSLKREFLKKWVKGLRKYNSQKKNMNLLERKKAIKLSADLAMASTKDKTTLWRKAFIANTSTSIHEQDTSTSSPQKKKITKKNSTNSCRLYRKRIIGSRKILRRHHVKQRVEASFIATKLVKKRTRTLKSLLPGGKFMDDACLVDETLDYIQSLKAQVEVMRCLVTASELFINPP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00443 179 MobiDBLite consensus disorder prediction 67 88 - -
Vivi1g00443 179 CDD bHLH_AtIBH1_like 125 169 IPR044549 GO:0006355
Vivi1g00443 179 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 6 170 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00443 Vivi-Chr1 8986332 8987631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00443 1 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 44.444 4.73e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00443 - - lja:Lj0g3v0101119.1 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00443 1 8986332 8987631 Vivi1g00443 1 8986332 8987631 ECH