Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00439 ATGCGAAATTTGAGTTCACTTAAGAGAGAATTCTTAAAGAAATGGATAAAGGGTCTAAGAAAATACAACTCACAAAAGAAGAACATGAACTTGTTTGAGAGAAAGAAAGCCATAAAGCTTTCCGCAGATTTAGCCATGGCTTCCACTAAAGACAAGACTACCCTTTGGAGAAAAGCATTTATTGCAAACACTTCAACAAGCATAGATGAACAAGATACATCAACATCATCACCACAAAAGAAGAAGATAACAAAGAAAAACTTGACGAATTCGTGTCGGCTTTATCGAAAAAGGATAATTGGAAGCAGAAAGATCTTGAGAAGAAATCATGTGAAACAAAGAGTGGAGGCAAGTTTTATTGCAACAAAGTTGGTTAAGAAAAGAACAAGAACACTCAAGAGTTTGTTACCTGGTGGAAAATTCATGGATGATGCTTGTTTGGTTGATGAAACCCTAGATTATATACAATCTTTGAAAGCTCAAGTTGAAGTCATGAGATGTCTTGTTACTGCCTCAGAGATCTTCATAAATCCACCGTAA 540 0.3556 MRNLSSLKREFLKKWIKGLRKYNSQKKNMNLFERKKAIKLSADLAMASTKDKTTLWRKAFIANTSTSIDEQDTSTSSPQKKKITKKNLTNSCRLYRKRIIGSRKILRRNHVKQRVEASFIATKLVKKRTRTLKSLLPGGKFMDDACLVDETLDYIQSLKAQVEVMRCLVTASEIFINPP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00439 179 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 6 170 IPR044660 GO:0006355
Vivi1g00439 179 CDD bHLH_AtIBH1_like 125 169 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00439 Vivi-Chr1 8744932 8746225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00439 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 42.857 3.89e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00439 - - lja:Lj0g3v0101119.1 198.749