Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00424 ATGGAGGGACAATCTTCTAATGAAGGTTCCAGTACCGGCAATGTCTCAGCAGACTCTTCTGATTCAACTGTTCAGCTCAATATTGAAACTTTAGATTCCCGCATCTACAGTTTTCAAGTTGAAAAAAATATACCCGTTTCCTTGTTCAAAGAAAAAATTGCTAGTGAAATAGGTGTACCGGTTAATCAGCAACGACTCATATTTAGAGGAAAAGTCCTCAAGGATGAACATGTCCTTTCTGAGTATCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAGCCAAATCCGCCTCAGACTTCTGGTGCGGGTTCCGTTGAGACAACTAGTACAAACAGTAACCGAGGAAACGGTGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGCCAAATTTCACACAGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAAGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTTGTTTATGCATTCTCTGCATCTATCTTCAGTATCTAATACTTATGCTTTAG 525 0.421 MEGQSSNEGSSTGNVSADSSDSTVQLNIETLDSRIYSFQVEKNIPVSLFKEKIASEIGVPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNPPQTSGAGSVETTSTNSNRGNGAGSGAPRNRVGQISHSVVLGTFNVGEQVEGTAQDLTRVCLCILCIYLQYLILML 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00424 174 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vivi1g00424 174 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vivi1g00424 174 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vivi1g00424 174 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Vivi1g00424 174 FunFam Large proline-rich protein BAG6 16 109 - -
Vivi1g00424 174 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g00424 174 SUPERFAMILY Ubiquitin-like 19 100 IPR029071 -
Vivi1g00424 174 Gene3D - 12 108 - -
Vivi1g00424 174 MobiDBLite consensus disorder prediction 93 128 - -
Vivi1g00424 174 SMART ubq_7 24 95 IPR000626 GO:0005515
Vivi1g00424 174 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vivi1g00424 174 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vivi1g00424 174 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 159 - -
Vivi1g00424 174 MobiDBLite consensus disorder prediction 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00424 Vivi-Chr1 8284873 8288318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00424 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.889 1.36e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00424 - - vvo:131627819 297.745