Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00413 ATGCCTCTCAACTTTCTCTTCCTCATCCTCCTCCTCCTCTCCCTCCAACCTCTCTCTTCGGCTTCCGCTCATCGCAACCCCGAAGTGGAAGCTTTGATGAGTATAAAAGATTCCCTCAATGATCCTCACGGTGCGTTAAGCAACTGGGACGAATTCTCCGTAGACCCCTGCAGTTGGTCCATGATTACTTGCTCTTCTGATTACTTCGTTATTGGCCTCGGAGCTCCCAGTCAATCACTCTCCGGAGTTTTGTCTTCCGCTATCGGAAATTTAACTAATCTTAAACAAGTGTTACTGCAGAATAACAATATCTCAGGCAAAATACCACCGGAACTTGGAAAGCTTCCCAAGCTTCAGACTTTAGATCTTTCGAGCAACAGTTTCTCTGGGTTCATTCCACCTTCACTTAGTCAATTGAATAGTCTCAAGTACCTGAGGCTGAACAACAATAGTTTGTCTGGGTCTTTTCCTGTTTCACTGGACAAAATTTCACAACTTACTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCCAGGTCATTTAATATTGTGGGAAACCCATTAATTTGTATAAGCAAATCTATTGAAGGCTGCTCTGGAACAGTGACTCTTATGCCTGTTCCTTTCTCTCAAGTATCATCACAAGGAAAACACAAGTCCAAGAAATTGGCAATTGCTCTTGGGGTCAGCTTTAGTTGTGTTTTCCTCTTAATCTTGTGTTTGGGGCTCTTTTGGTATAGAAAGAAAAGACAGCATGGAGCTATCTTGTATATTGGTGATTATAAAGAGGAGTCTGTTAGCTTAGGAAATCTTAAAAGTTTCGGCTTCAGAGAGCTCCAACATGCAACTGATAGTTTCAGCTCAAAGAGTATACTCGGTGCTGGAGGTTTTGGAAATGTTTATAGGGGGAAGCTTGGAGATGGCACACTGGTGGCGGTGAAAAGACTGAAAGATGTTAATGGTAGTGCTGGGGAATTACAGTTCCAAACAGAATTGGAAATGATCAGCTTGGCAGTTCACCGTAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTACTGAAAAACTTCTGGTTTACCCTTACATGTCTAACGGAAGCGTGGCCTCCAGGCTTAGAGGAAAACCAGCTTTAGATTGGAACACAAGAAAGAGAATAGCAATTGGAGCTGCAAGGGGCCTTCTGTACCTTCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTAAAGGCTGCCAACGTGCTTCTGGATGACGATTACGAGGCTATTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTCGGGCACATTGCGCCTGAGTACCTATCCACTGGCCAATCATCTGAAAAAACTGATGTGTTTGGATTCGGCATTCTCTTGTTAGAGCTTATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACCTTGAATCAGAAAGGTGCTATGCTTGAGTGGGTGAGGAAAATACAGCAAGAAAAAAAGGTGGAAGTGTTGGTGGACAAAGAACTAGGGAGCAACTATGATAGGATAGAGGTTGGGGAGATGCTTCAAGTAGCTCTACTCTGTACTCAATATTTGACAGCTCACCGTCCGAAAATGTCCGAAGTGGTCCGAATGCTCGAAGGAGATGGACTTGCTGAAAAATGGGCCTCAACACATAATTATGGTAGCAACTGCTGGAGCCATAGTCACAGCAACAACAGTAGCAGCAATAGCTCTTGTCGCCCTACCTCTGCTTCAAAACACGATGACAATATTCATGATCGTTCGAGCTTGTTTGGCATGACAATGGATGATGACGATGACCAGTCTTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1917 0.4377 MPLNFLFLILLLLSLQPLSSASAHRNPEVEALMSIKDSLNDPHGALSNWDEFSVDPCSWSMITCSSDYFVIGLGAPSQSLSGVLSSAIGNLTNLKQVLLQNNNISGKIPPELGKLPKLQTLDLSSNSFSGFIPPSLSQLNSLKYLRLNNNSLSGSFPVSLDKISQLTFLDLSYNNLSGPLPKFPARSFNIVGNPLICISKSIEGCSGTVTLMPVPFSQVSSQGKHKSKKLAIALGVSFSCVFLLILCLGLFWYRKKRQHGAILYIGDYKEESVSLGNLKSFGFRELQHATDSFSSKSILGAGGFGNVYRGKLGDGTLVAVKRLKDVNGSAGELQFQTELEMISLAVHRNLLRLIGYCATPTEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDDYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQQEKKVEVLVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASTHNYGSNCWSHSHSNNSSSNSSCRPTSASKHDDNIHDRSSLFGMTMDDDDDQSLDSYAMELSGPR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00413 638 FunFam Somatic embryogenesis receptor-like kinase 1 370 581 - -
Vivi1g00413 638 Pfam Leucine rich repeat 116 176 IPR001611 GO:0005515
Vivi1g00413 638 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 572 - -
Vivi1g00413 638 SUPERFAMILY L domain-like 25 198 - -
Vivi1g00413 638 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vivi1g00413 638 Gene3D Ribonuclease Inhibitor 25 207 IPR032675 -
Vivi1g00413 638 Pfam Protein kinase domain 294 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00413 638 ProSiteProfiles Protein kinase domain profile. 293 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00413 638 Gene3D Phosphorylase Kinase; domain 1 264 369 - -
Vivi1g00413 638 Gene3D Transferase(Phosphotransferase) domain 1 370 580 - -
Vivi1g00413 638 MobiDBLite consensus disorder prediction 582 638 - -
Vivi1g00413 638 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 207 - -
Vivi1g00413 638 SMART serkin_6 293 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00413 638 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Vivi1g00413 638 MobiDBLite consensus disorder prediction 602 618 - -
Vivi1g00413 638 MobiDBLite consensus disorder prediction 582 601 - -
Vivi1g00413 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Vivi1g00413 638 CDD TM_EGFR-like 227 259 - -
Vivi1g00413 638 SUPERFAMILY Protein kinase-like (PK-like) 272 563 IPR011009 -
Vivi1g00413 638 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00413 Vivi-Chr1 8112670 8116960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00413 7 638 Receptor kinase-like Gene Family AT5G16000 63.807 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1g00413 Pkinase 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00413 - - gmx:100797186 1038.48