Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00410 ATGGCGAAAAAATCGCAGAAGCAAATCGAGAAAGAGAATGTTAACAATGATTTGAATGCAAGTAGCACGGTTGTGACAAAGGCGAAACGGACTAGGAAGAGTGTCCCTAGAACTTCTCCGCCTCAACGCAGCTCGATATATCGAGGAGTCACTAGGCACCGGTGGACTGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCTCAGAACAAGAAAGGAAGACAAGGTGCTTATGATAATGAGGAAACAGCAGCTCATGCATATGATTTAGCAGCATTGAAATATTGGGGTCAAGATACAATTATTAATTTTCCGTTATCAAATTATCAGAAAGAACTTACAGAGATGGAGACTCAATCAAGAGAGGAATATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCTAGAGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCACAATGGAAGGTGGGAGGCTAGGATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTTGGAACTTATGCTACCCAAGAAGAAGCGGCTACAGCTTATGACATGGCAGCTATAGAGTATCGTGGACTTAACGCGGTTACAAATTTCGATCTCAGCCGATATATTAAGTGGCTTAAGCCCAACAACAACAATAGTGAAAACAATGAGAAGTCCAATATTAGTCTTTGTCACACTAACTCTAACCATAATACCAATGACACAAACTCTAATGAAGAATTGGAATTTACCTTAGACAATGAAATAGTATCACTCAATAATAATACTACTATTGATGAAACCACATTGGTTCAACCTCGTCCAACTAGTGCCACGTCAGCCCTAGAGCTTCTTCTTCAATCATCAAAGTTTAAGGAAATGGTGGAAATGGCATCTATGACGACATCCAATGGTTCAACAACGTTGGAGTCTGATCAATTGTCACCATGTGCATTTCCTGATGATATTCAAACTTATTTTGAGTATGAAGATTTCAGTGATACTATGATTGATGATCTCAACTCCATTGTGCCTATGTTTCATTGTGATGGTTTTGAGGGTGTTGAGATTTTATAA 1071 0.3875 MAKKSQKQIEKENVNNDLNASSTVVTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELTEMETQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNSENNEKSNISLCHTNSNHNTNDTNSNEELEFTLDNEIVSLNNNTTIDETTLVQPRPTSATSALELLLQSSKFKEMVEMASMTTSNGSTTLESDQLSPCAFPDDIQTYFEYEDFSDTMIDDLNSIVPMFHCDGFEGVEIL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00410 356 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Vivi1g00410 356 MobiDBLite consensus disorder prediction 1 47 - -
Vivi1g00410 356 FunFam AP2-like ethylene-responsive transcription factor 144 205 - -
Vivi1g00410 356 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 Pfam AP2 domain 46 101 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 SUPERFAMILY DNA-binding domain 45 111 IPR016177 GO:0003677
Vivi1g00410 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 268 - -
Vivi1g00410 356 SMART rav1_2 46 115 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 FunFam AP2-like ethylene-responsive transcription factor 45 111 - -
Vivi1g00410 356 CDD AP2 45 111 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 MobiDBLite consensus disorder prediction 12 29 - -
Vivi1g00410 356 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Vivi1g00410 356 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700|GO:0006355
Vivi1g00410 356 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Vivi1g00410 356 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00410 Vivi-Chr1 7974510 7977134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00410 42 207 AP2-EREBP Transcription Factor Family AT5G57390 71.598 4.03e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vivi1g00410 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00410 K09285 - gmx:100793339 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00410 1 7974510 7977134 Vivi1g00410 1 7974510 7977134 ECH
Vivi1g00410 1 7974510 7977134 Vivi4g01442 4 53638453 53639988 PCT