Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00398 ATGTCTCTGTTCTTTTTTCTTGTCATTGTTCATTCTCATTCTAGAGTTCTTGTGGAGGAACATATTGATATTGGCCTTGTGAATGATAAAAACTCACTAGTTTCATTCATGTCATGCATTATCTCGGACCCCGAAAACGCGCTAACGAGTTGGAAATCAAACGTCATTCATGTTTGCGATTGGTCTGGTGTAAAATGCAACAATGCAAGTAATAATAGAAGGATCATAGAGCTTGATCTAAATGGAAGATCATTAACAGGAACTTTATCCCTTTCTCTTGCAAACCTCTCTTTCTTGCAAATTCTCGACCTTTCCCGAAATCAATTGAGGGGTCACATTCCAAGAGAATTAGGCTATTTAGTTCATCTTCAAGAACTTAGTTTGTCTTGGAATTTTCTTCAAGGAAACATTCCTTTAGAATTCGGTTCATTACGCGACTTATATTATCTTGACTTGGGAAGCAATCAACTTGAGGGAGCGATTCCTCCATCACTTTTATGTAATGGAACTTCATTGAGTTATATAGACCTCTCTAATAATTCATTAGTGGGAGAGATTCCATTAAACAATAATAAGTGTGTGCTTAAAGAGCTTAAGTTTCTATTACTTTGGTCTAACAAACTTGCAGGACAAGTTCCTTTGGCTCTTTCAAACTCTACCAAGCTTAAATGGCTTGATTTGGAGTCAAACATGTTGAGTGGTGAACTTCCATCTAAGATTATTTGTAACTTTCCACAATTGCAATTTCTCTACTTATCATATAACAATTTTGTTAGCCATGATGGTAACACTAACCTTGAGCCTTTCTTTGCTTCTTTGATGAATTTGTCTAACTTTCAAGAACTCGAATTAGCCGGAAACGGCCTCGGCGGGAAGCTTCCTTGTATTATAGGTAATCTTCCTTCCGGCATGCAACATCTTCACCTACAAGAGAATCTCATACATGGCTCTATACCACCTCAAATTTCCAACCTTGTCAATTTAACTTTGTTGAAGTTGTCTAGTAACCGAATAAACGGAACAATCCCTCGAAGCCTATGCAAGATTGTTAGGCTAGAGAGAATTTACCTGTCGAACAATTATCTATCTGGTGAAATTCCTTCAACTCTAGGCGATATCAAGCATCTTGGACTACTTGATTTGTCGAAAAACAGGCTTTCTGGTTCGATACCTGATAGTTTTTCCAAACTCCCTCAGTTAAGAAGGCTTTTACTCCACGGCAACAACCTTTCCGGAACAATTCCTCCGAGTCTAGGAAAATGTGTGAACTTGGAGATTCTAGACTTGTCTTATAACAAGATCACAGGGATGATTCCTTCAGAAGTTGCAGCATTGAGTAGCTTGAAACTTTACTTGAATCTGTCGAACAACGGGTTACAAGGTCCTTTACCATTAGAACTAACCAAAATGGATATGGTTCTAGCTATTGATGTATCCATGAATAATCTCTCGGGAAGAATTCCACCACAGTTCGAAAATTGCATCGCGTTAGAATATCTTAATCTTTCTGGTAATTCCTTAGAGGGTCCTCTCCCTTATTCTTTAGGACAATTGCCTTATATTCAATCACTTGATGTATCTTCAAATCAATTGAATGGAACAATACCAGAGTCCCTTCAGTTCTGTTCCTATCTCAAAACACTTAACTTCTCTTTCAACAAATTCTCAGGAAATGTTTCAAACAACGGAGCATTTTCGTCTTTAACCGCAGACTCTTTTCTAGGAAACGATAATCTCTGTGGTTCATTTAAAGGCATGAAACAATGTCATAGGAAAAACAGTTACCATTTGGTGCTTTTGTTAGTTCCTATGTTGCTATTTGGCACTCCTATGATATGCATGTGTAAGAGCTCCATGATAATCAAATCAAAAGTGAGAAAACAACAGCGAGCCGTCAGTAACGGATGTGACACGGAGGATGAAGAAGAAGATGAAACAAAAGAGCTCGGGCACCCGAGAATTTCTTATAAACAACTTCGAGAAGTCACTGGAGGGTTCAGTGGTTCAAGCCTCATCGGTTCAGGCCGGTTTGGTTGGGTTTACAAAGGTGTACTCTTAGATAATACAAGAGTAGCAGTTAAGGTATTAGATACAACAACAACAAAAGACGGTGAGATATCGCGGAGCTTTAGAAGGGAATGCAAGATCCTTAAACAGATAAGGCACAGAAATTTAATAAGGATCATTACAATTTGCAGCAAGAAGGAATTTAAGGCTATTGTTCTACCATTGATGCCAAATGGTAGTCTCGAGAGGAACTTATACGATCCAAACAACGAATTAAACACGAGGTTGAGTGTTATTCAAATGGTTAAGATTTGCAGCGATGTAGCTGAGGGAATGTGTTATCTGCATCATTACTCTCCTGTGAAAGTAGTGCATTGTGATCTTAAGCCTAGTAACATACTACTTGATGATGATTTCACAGCATTGGTTTCGGATTTTGGAATTTCGAGGCTTCTAAAAGATGACGATGGAAATAACTCCAGGTGTAACTCGATATCTTTCAGTTCAACAGATGGTTTGTTATGTGGCTCTGTTGGCTATATAGCTCCTGGTATGTACTTTCTGACAACTAATTCAACATTTTTCTGTCATGTTCATAAAAACAACTTATAAAAACTGTTTATAGCTTATATGAAAATATTTGGACTTTATTTTATCATTTTATTTATTTTGTTGGACAAGACAGAATATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTACGGAGTAATTCTGTTAGAAATAGTGACCGGTAAACGCCCTACCGACGTCCCCATCCATGAAGGCTCTAGCTTGCATGATTGGGTTAAGAGACAATACACACAGCCACACAAACTTGAAAGCATTGTTGAACAAGCACTTCAAAGATTCTCTCTTTCTTGCGCGTCAAGTCACCACAACAAAATTTGGGAAGATGTTATGTTGGAACTCATTGAGCTAGGGCTACTCTGCACGCAACAGAACCCTTCAACAAGACCGACGATGCTAGATGTAGCACAAGAGACAGGGAAGTTGAAGGATCACCTCAAAAATTCTTTCACGAAAGAAGATAATTTAATTCTTTAA 3084 0.3813 MSLFFFLVIVHSHSRVLVEEHIDIGLVNDKNSLVSFMSCIISDPENALTSWKSNVIHVCDWSGVKCNNASNNRRIIELDLNGRSLTGTLSLSLANLSFLQILDLSRNQLRGHIPRELGYLVHLQELSLSWNFLQGNIPLEFGSLRDLYYLDLGSNQLEGAIPPSLLCNGTSLSYIDLSNNSLVGEIPLNNNKCVLKELKFLLLWSNKLAGQVPLALSNSTKLKWLDLESNMLSGELPSKIICNFPQLQFLYLSYNNFVSHDGNTNLEPFFASLMNLSNFQELELAGNGLGGKLPCIIGNLPSGMQHLHLQENLIHGSIPPQISNLVNLTLLKLSSNRINGTIPRSLCKIVRLERIYLSNNYLSGEIPSTLGDIKHLGLLDLSKNRLSGSIPDSFSKLPQLRRLLLHGNNLSGTIPPSLGKCVNLEILDLSYNKITGMIPSEVAALSSLKLYLNLSNNGLQGPLPLELTKMDMVLAIDVSMNNLSGRIPPQFENCIALEYLNLSGNSLEGPLPYSLGQLPYIQSLDVSSNQLNGTIPESLQFCSYLKTLNFSFNKFSGNVSNNGAFSSLTADSFLGNDNLCGSFKGMKQCHRKNSYHLVLLLVPMLLFGTPMICMCKSSMIIKSKVRKQQRAVSNGCDTEDEEEDETKELGHPRISYKQLREVTGGFSGSSLIGSGRFGWVYKGVLLDNTRVAVKVLDTTTTKDGEISRSFRRECKILKQIRHRNLIRIITICSKKEFKAIVLPLMPNGSLERNLYDPNNELNTRLSVIQMVKICSDVAEGMCYLHHYSPVKVVHCDLKPSNILLDDDFTALVSDFGISRLLKDDDGNNSRCNSISFSSTDGLLCGSVGYIAPGMYFLTTNSTFFCHVHKNNLXKLFIAYMKIFGLYFIILFILLDKTEYGMGKHASTEGDVYSYGVILLEIVTGKRPTDVPIHEGSSLHDWVKRQYTQPHKLESIVEQALQRFSLSCASSHHNKIWEDVMLELIELGLLCTQQNPSTRPTMLDVAQETGKLKDHLKNSFTKEDNLIL 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00398 1027 SUPERFAMILY Protein kinase-like (PK-like) 647 1006 IPR011009 -
Vivi1g00398 1027 Gene3D Transferase(Phosphotransferase) domain 1 745 1026 - -
Vivi1g00398 1027 Pfam Leucine Rich repeat 421 436 IPR001611 GO:0005515
Vivi1g00398 1027 SUPERFAMILY L domain-like 327 581 - -
Vivi1g00398 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 199 595 - -
Vivi1g00398 1027 Gene3D Phosphorylase Kinase; domain 1 636 743 - -
Vivi1g00398 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vivi1g00398 1027 FunFam Os07g0541700 protein 745 835 - -
Vivi1g00398 1027 Pfam Leucine rich repeat 476 531 IPR001611 GO:0005515
Vivi1g00398 1027 Pfam Leucine rich repeat 351 410 IPR001611 GO:0005515
Vivi1g00398 1027 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 187 - -
Vivi1g00398 1027 SUPERFAMILY L domain-like 33 260 - -
Vivi1g00398 1027 SMART LRR_typ_2 397 421 IPR003591 -
Vivi1g00398 1027 SMART LRR_typ_2 144 168 IPR003591 -
Vivi1g00398 1027 SMART LRR_typ_2 422 445 IPR003591 -
Vivi1g00398 1027 SMART LRR_typ_2 373 396 IPR003591 -
Vivi1g00398 1027 SMART LRR_typ_2 96 120 IPR003591 -
Vivi1g00398 1027 SMART LRR_typ_2 325 349 IPR003591 -
Vivi1g00398 1027 Gene3D Ribonuclease Inhibitor 192 593 IPR032675 -
Vivi1g00398 1027 ProSiteProfiles Protein kinase domain profile. 666 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00398 1027 CDD STKc_IRAK 672 1011 - -
Vivi1g00398 1027 SMART serkin_6 666 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00398 1027 FunFam Leucine-rich repeat receptor-like protein kinase 26 188 - -
Vivi1g00398 1027 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vivi1g00398 1027 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Vivi1g00398 1027 Pfam Protein kinase domain 670 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00398 1027 ProSiteProfiles Leucine-rich repeat profile. 423 444 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00398 Vivi-Chr1 7701190 7704290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00398 13 1023 Receptor kinase-like Gene Family AT3G47110 34.626 8.73e-151 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi1g00398 Pkinase 1.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00398 - - tpra:123909601 1582