Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00378 ATGGAGGCACCGCTATTTTCCAACTTAGAAGAACAGGATGATGATTCTTTCTTTAACTATCTCAGCAGTCTTTCTCCTTTAAAGACATTGAACTCACTTCCCATGGATTATCCTCTTTTCACATCACCCGATGTGACTTTTTTTGAGGATTCCACATTCTTCGATTCTAGGGATAATCTTTTGGATACATCAAACCCTCAAGTTTCGTGCGAGAATGTAAATAAAATTTATTCACATGAAAAAGTGCCTACTTATTCTACTAATTTATCTCATGATTCAACTGAGTCATCTAGTCAAGAAGCTGTGCAATATGGTTGTTGTAGCCCAGAAGATCATCCACTAATCTCAAGGGATGATGTTAACTACCTTCTTGGATTACTTGGCATGCAAGAACCAAATGGTACCAATGTCAAAGATTCAATTGAGGCAAACACTCAAGTGCCAGATTGTGATTACAATAGCTTAATTAGTACAACACAATCTTTGATTCCTTTACCACAATCTACCACTAACAGTAGTAATTATACAATGCATACTGTTGATCCACCTGCTTCTACTTCAATACATGAGTCTGAAAATAATCCTTATGAACCAATACCTGCCACTTACAGAAATCAAACATGGAACAATCTTGCCAATTTCGCTTTAATGGATAGCAAACCAATTCAGACAGGGAATGATGAGCTTGTGCGTATTAGACACAGTATACAAATGGGCTTTCTGGATTATGACAAGACCCGTTATACTTCAAACATCACTTCCTGTTCTTCAAAATCTGGTGAGAAGAATGCTAGTAATGAAACTGGTTTTGCAATTCCAGCCTCAAATCATTACAGAGGCATAGAAAATGAAATGACGTTTTCCAGATGGAATCCTGAACTGCCGAGCTGCAATTCTTCCTTGCATCTTTCTGAAAGCCACCTATCGCAGCTCTCCGCATCAATGGAAAATCATTTGGGGCCATCTGATAATGAAGTTCAGTCTACAAAAAATTTCACTAAGTTTTTAGTTCACATCACGGGTGAAGATTTCTGCGGTAGTACCCTCAAAATGGAGAGTAAACAGTTGGATCCTCCAAACATGAAAAGGAAGAGGAAAGGTCAGATTGATGTAGGTGCTTCTTGTTCTAAACATGAAAAGGAAGAGGAAAGTGCTGATTTCGGTCAGAGTACCCTCAGAAAGAAGAGGAAAATCCACAAATCAGGTCACTGTCAATGTAGAAAAGCAAGCTGCCTGAGGAAATATTGTGAATGTTTTAAGGGTGGTGTTGGTTGCTCCCCAAGTTGTAAGTGTCAAGGATGTGAGAATATATATGGTAGAAAGGATAGGGAGGCACAAACAAAATCGGAGCTTGAAGAAACAGAAGCATTACAGATTTGCAGACCATTGGAAAGATGTAGTGGCAGCCAAAAGAAAGAACTTGTGGAATGA 1431 0.3871 MEAPLFSNLEEQDDDSFFNYLSSLSPLKTLNSLPMDYPLFTSPDVTFFEDSTFFDSRDNLLDTSNPQVSCENVNKIYSHEKVPTYSTNLSHDSTESSSQEAVQYGCCSPEDHPLISRDDVNYLLGLLGMQEPNGTNVKDSIEANTQVPDCDYNSLISTTQSLIPLPQSTTNSSNYTMHTVDPPASTSIHESENNPYEPIPATYRNQTWNNLANFALMDSKPIQTGNDELVRIRHSIQMGFLDYDKTRYTSNITSCSSKSGEKNASNETGFAIPASNHYRGIENEMTFSRWNPELPSCNSSLHLSESHLSQLSASMENHLGPSDNEVQSTKNFTKFLVHITGEDFCGSTLKMESKQLDPPNMKRKRKGQIDVGASCSKHEKEEESADFGQSTLRKKRKIHKSGHCQCRKASCLRKYCECFKGGVGCSPSCKCQGCENIYGRKDREAQTKSELEETEALQICRPLERCSGSQKKELVE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00378 476 MobiDBLite consensus disorder prediction 355 388 - -
Vivi1g00378 476 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 399 456 IPR044522 GO:0003700
Vivi1g00378 476 MobiDBLite consensus disorder prediction 356 388 - -
Vivi1g00378 476 ProSiteProfiles CRC domain profile. 404 439 IPR005172 -
Vivi1g00378 476 SMART CXC_2 399 440 IPR033467 -
Vivi1g00378 476 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 403 436 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00378 Vivi-Chr1 7378112 7380343 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00378 393 457 CPP Transcription Factor Family AT3G22780 33.803 3.73e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi1g00378 TCR 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00378 - - vvo:131639692 783.097