Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00374 ATGCAGGATGATGATTCTTTCTTTAACTATCTCAGCAGTCTTTCTCCTTTAAAGACATTGAACTCACTTCCCATGGATTATCCTCTTTTCACATCACCTGATGTCACTTTTTTTGAGGATTCCACATTCTTCGATTCTAGGGATAGCCTTTTGGACACATCAAACCCTCAAGTTTCGTGCGAGAATGTAAATAAAATATATTCACATGAAAATGTTCCTACTTATTCTACTCATTTATCTCATGATTCAACTGAGTCATCTAGTCAACAAGCTGTGCAATATGGTTCTTGTAGCCCAGAAGATCATCCACTAATCTCAAGGGATGATGTTAACTATCTTCTTGGATTACTTGGCATGCTAGAACCAAATGGTACCAATGTACAAGACCACTCTGTCAAAGATTCAATTGAGGCAAACACTCAAGTGCCACAATCTAACACTAATTATGAAATGCATACTGTTGATCCACTTGCTTCTACTTCAATACATGGGCCTGAAAATAATCCTTATCAACCAATACCTGCCACTTACAGAAATCAAACATGGAACAATCTTGCCAATTTCGCTTTAATGGATAGCAAACCAATTCAGACAGGGAATGACGAGCTTGTGCGTATTAGACACAGTATACAGATGGGTTTTCTGGATTATGACAAGACCAGTTATACTTCAAACATCACTTCCTGTTCTTCAAAATCTGGTGAGAAGAATGCTAGTAATGAAAATGGTTTTGGAATTCCAGCCTCAGATCATTACAGATGGAATCCTGAACTTCCGAGCTGCAATTCTTCCTTGCATCTTTCTGAAAGCCACCTATCGCAGCTCTCCGCGTCAATGGAAAATCATTTGGGGCCATCTGATAATGAAGTTCAGTCTACAAAAGATTTCACAAAGTTTTTAGTTCACATTAAGGGTGAAGATTTCTGCGGTAGTACCCTCAAAATGGAGAGTAAACAGTTGGATCCTCCAAACAAGAAAAGGAAGAGGAAAGGTCAGATTGATCTAGGTGCTTCTTGTTCAAAACATGAAAAGGAAGAGGAAAGTGCTGATTTCTGTCAGAGTACCCTCAGAAAGAAGAGGAAAATCCACAAATCAGGTCACTGTCAGTGTAAAAAAGCAAGCTGCCTGAGGAAATATTGTGAATGTTTTAAGGGTGGTGTTGGTTGCTCCCCAAGTTGTAAGTGTCAAGGTTGCGAGAATATATATGGAAGAAAGGATAGGGAGGCGGAAACAAAATCGGAGCTTGAAGAAACAGAAGCGTTACAGATTTCTAGATCATTGGTTCTATTACCTTATTTATCATTGGAGAATCCACAAAGATCTTTCGCTGAATTGTTTGGCAGCAAAAACCAAGAGCTTATGGAATCAAATGCTGTTGGGTCAGTCTATTCATATGAAAATATACAAGCATTTCATTCTCACAACAGTTTCCACAATGTAACTTGA 1446 0.3859 MQDDDSFFNYLSSLSPLKTLNSLPMDYPLFTSPDVTFFEDSTFFDSRDSLLDTSNPQVSCENVNKIYSHENVPTYSTHLSHDSTESSSQQAVQYGSCSPEDHPLISRDDVNYLLGLLGMLEPNGTNVQDHSVKDSIEANTQVPQSNTNYEMHTVDPLASTSIHGPENNPYQPIPATYRNQTWNNLANFALMDSKPIQTGNDELVRIRHSIQMGFLDYDKTSYTSNITSCSSKSGEKNASNENGFGIPASDHYRWNPELPSCNSSLHLSESHLSQLSASMENHLGPSDNEVQSTKDFTKFLVHIKGEDFCGSTLKMESKQLDPPNKKRKRKGQIDLGASCSKHEKEEESADFCQSTLRKKRKIHKSGHCQCKKASCLRKYCECFKGGVGCSPSCKCQGCENIYGRKDREAETKSELEETEALQISRSLVLLPYLSLENPQRSFAELFGSKNQELMESNAVGSVYSYENIQAFHSHNSFHNVT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00374 481 ProSiteProfiles CRC domain profile. 368 403 IPR005172 -
Vivi1g00374 481 MobiDBLite consensus disorder prediction 76 100 - -
Vivi1g00374 481 SMART CXC_2 363 404 IPR033467 -
Vivi1g00374 481 MobiDBLite consensus disorder prediction 319 340 - -
Vivi1g00374 481 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 363 419 IPR044522 GO:0003700
Vivi1g00374 481 MobiDBLite consensus disorder prediction 316 340 - -
Vivi1g00374 481 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 367 400 IPR005172 -
Vivi1g00374 481 MobiDBLite consensus disorder prediction 76 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00374 Vivi-Chr1 7309333 7311622 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00374 357 428 CPP Transcription Factor Family AT3G22780 32.051 7.66e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi1g00374 TCR 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00374 - - vvo:131600299 967.222