Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00347 ATGGAGTTCAAATACCGTGCCATCGACAACGTCAAACCACCACCAACATCGCATTCTCCTTCCCCAGCCACATATCTCCCTGATCGATCACTTCAAATGGACGGTGGTTTTTCTGGCTTCAGACCACCATTAACCGGCGAGGCGGCACTACAGCGAGAAGTTGAGAAGGAGCAAATCCGCCGAGAAATTCTGCGACGGATGGAGTTGGAGGAAGAAGTGAGGAGGGAGCTTGCAATTGAGAGAGATTTGGGGATTTCAATACAGAGGCCCCTGAATATTCATGGAGTCCCACAGTGGTCAAATCCAACGGTGGTGAACTCGGTGATGAACTCTGTTGTTTTTGGCCATATGGCTTCGTCGCAACCAACGATGATTCTGCCTCCTACGGCAATCGACCCTTCTCCAGAGATCAATAATGAGGACAAAGTTATCGTGTTGGATAGGCCAGATCCCGAACTCTTTTATGCAAAACGAAAAGCAACGGCGTTGGCTAATTCGGAGACTGGGCCTTCTACATTTAATTTGAAGAAAAAATTGAAGCAAGAGTGGAGTTGTGCACTATGTGGAATTAAAGCCACAAGTGAGAGTGGCTTGAATGCTCATCTAAATGGTAAGAAGCACAAGACTAAGGAAGCTGGACAAAATAGAGAGATTTGCAAGAGCAACAAAGAAAGTGAAAAAATTGTGAATGTCAAGGCCACTGAAATAGTTGATACATCGATGGTTCATAAGAGTATAAATGAATCTAAAAGTGAAGAGCAACTTGTAGAGATAATGGTTGATAATGGCATAACTTCAACAAAACCCAAAAATAAAGACGATGCAACTGAGGAAGAGGAAGCAGAGAAGATAAATGCATAA 861 0.4379 MEFKYRAIDNVKPPPTSHSPSPATYLPDRSLQMDGGFSGFRPPLTGEAALQREVEKEQIRREILRRMELEEEVRRELAIERDLGISIQRPLNIHGVPQWSNPTVVNSVMNSVVFGHMASSQPTMILPPTAIDPSPEINNEDKVIVLDRPDPELFYAKRKATALANSETGPSTFNLKKKLKQEWSCALCGIKATSESGLNAHLNGKKHKTKEAGQNREICKSNKESEKIVNVKATEIVDTSMVHKSINESKSEEQLVEIMVDNGITSTKPKNKDDATEEEEAEKINA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00347 286 Coils Coil 47 72 - -
Vivi1g00347 286 MobiDBLite consensus disorder prediction 260 286 - -
Vivi1g00347 286 Gene3D Classic Zinc Finger 173 216 - -
Vivi1g00347 286 SUPERFAMILY beta-beta-alpha zinc fingers 165 214 IPR036236 -
Vivi1g00347 286 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g00347 286 Pfam Zinc-finger of C2H2 type 183 207 - -
Vivi1g00347 286 PANTHER OS06G0651300 PROTEIN-RELATED 1 274 - -
Vivi1g00347 286 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00347 Vivi-Chr1 6761609 6763220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00347 183 269 C2H2 Transcription Factor Family AT2G19380 28.736 7.13e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00347 - K03260 vvo:131616058 328.176