Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00329 ATGGCTGAGCACCGCGTCTCCGAACCTTTCCCAGTGGGACCCACTCAGCTTGGAAATAACTCTGAAACTAACGACGAAAAAGTAAAAGCTGAAGAACGAGTCGGTGAATCACCGCGTGTCACCGAGTCGAAACAAGGCGATTCAGCGAGTTCTATTGAACATTCCGTAGAGCGTAATTCAGAAACCCTAGTTGTTCCTCCATCTTCGATTTCGCAGAAGCAGAGTTTTGATACGCCGAATACGCTCAATTCGGGTGATAAAGCTGAAAATAAGGAAACAGTTGGACCTCCTGAAAAGGAAATTACTGCAAGTGAAGCAGCCTCGACACCTCCAACTCCGACTGAAAATCAGCTTCAAATGACCGTGTATTCACCAAATTCTGTTACAAAATCTTTTTCACCTGTTCCTTTTTCAACCATACAAATACATAAAATGTCTCCTCCAAGCATTAGTTACACACCTGTACCAGGAGCAGGCAAAAAAAATCCTTCTGGTGGTAAAGCCTTATCTTCAGTTTCTGTTCCAAGGACATCAGCATCCGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTGAAGAGTCCTACTACAGGTTCTCGAAGCTATTACAGGTGTACTCAGTCAAACTGTTGTGCTAAGAAGATTGAATGCTGGGGTCATTCAGGTCATGTGATAGAGACTGTTTATAAAAGTGAGCACAGTCATGATCCCCCGCGGAAGATTAATTCCCTTAGGGAAAGTAAGTTTGCATCTCCCAAAGAACCTACTGCAGTGAATAGTGTTTTAGTGAAGCCGGTCAATATTCTGAAAGATTCTGATCCGTCCACATCTTCCAAAGCTCAAGAAGAAGCACCGTGCGGTGATGACAAAAAACCGCAAAACTCGTCTAATATCAATGGTAATGGTCAAATTATTTTGAAGGAGGAACATCTAGACGAGCCAGAGCCAAAACGAAGGCAAGAGAAAGGCGACTTAATTCTCCCAGATTCTCATGTAAAACCTGAAAAGAAATCCAAGTTTGTTGTACATGCAGCAGGAGATGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAGGGTAACCCACATCCCAGAAACTACTACAGATGCACTTCTGCCGGATGTCCTGTCCGGAAGCACATCGAGACAGCAGTAGACAACTTAGATGCTGTCATCATAACATACAAGGGTGTACATGACCATGACACTCCTGTGCCGAAGAAACGACATGGCCCACCAAGTGCTCCTCTCGTGGCTGCTGCAGCACCTGCCTCGATGAATAATTTGCAGTTGATTAAACCAAGCTCGCCTCTGCAAAACCAGAAAATTTCTACTCAATGGTCAGTGGACACAAAAGGTGAACTAACTGGGGAAGCCATAGCCATGGACCTTGGGGGTGAGAAAGCAATAGAGTCAGCTCAAACTCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1485 0.4471 MAEHRVSEPFPVGPTQLGNNSETNDEKVKAEERVGESPRVTESKQGDSASSIEHSVERNSETLVVPPSSISQKQSFDTPNTLNSGDKAENKETVGPPEKEITASEAASTPPTPTENQLQMTVYSPNSVTKSFSPVPFSTIQIHKMSPPSISYTPVPGAGKKNPSGGKALSSVSVPRTSASDGYNWRKYGQKQVKSPTTGSRSYYRCTQSNCCAKKIECWGHSGHVIETVYKSEHSHDPPRKINSLRESKFASPKEPTAVNSVLVKPVNILKDSDPSTSSKAQEEAPCGDDKKPQNSSNINGNGQIILKEEHLDEPEPKRRQEKGDLILPDSHVKPEKKSKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNLDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPASMNNLQLIKPSSPLQNQKISTQWSVDTKGELTGEAIAMDLGGEKAIESAQTLLSIGFEIKPC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00329 494 SUPERFAMILY WRKY DNA-binding domain 176 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 MobiDBLite consensus disorder prediction 1 118 - -
Vivi1g00329 494 FunFam WRKY transcription factor 337 413 - -
Vivi1g00329 494 MobiDBLite consensus disorder prediction 166 183 - -
Vivi1g00329 494 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 102 440 IPR044810 GO:0003700
Vivi1g00329 494 MobiDBLite consensus disorder prediction 269 332 - -
Vivi1g00329 494 ProSiteProfiles WRKY domain profile. 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 Gene3D WRKY domain 337 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 Gene3D WRKY domain 167 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 SUPERFAMILY WRKY DNA-binding domain 348 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 MobiDBLite consensus disorder prediction 151 183 - -
Vivi1g00329 494 MobiDBLite consensus disorder prediction 41 88 - -
Vivi1g00329 494 MobiDBLite consensus disorder prediction 307 332 - -
Vivi1g00329 494 ProSiteProfiles WRKY domain profile. 347 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 Pfam WRKY DNA -binding domain 354 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 Pfam WRKY DNA -binding domain 181 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 MobiDBLite consensus disorder prediction 24 40 - -
Vivi1g00329 494 SMART WRKY_cls 352 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00329 494 SMART WRKY_cls 179 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00329 Vivi-Chr1 6218302 6222658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00329 169 494 WRKY Transcription Factor Family AT4G30935 59.146 1.41e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g00329 WRKY 4.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00329 - - mtr:11440414 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00329 1 6218302 6222658 Vivi1g00329 1 6218302 6222658 ECH