Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00327 ATGGGTTTAGGAGTGTTTGGATCTGTTCTGGTTTTGACATTTTTGTTCAAGCATTTAGCTTCTCAGCAACCAAACACTGATGAGTTTTATGTATCTGATTTTTTGAAGAAGATGGGTTTACCACCATCTTCAAAAGTTTATGACTTTTCATCTTCAGTTTGTTCATGGAAAGGTGTTTTCTGTGATGCAAACAAACAACATGTTATTGAGTTGAGTTTTTCTGGAATTGGACTCACTGGTCCTATTCCTGAAACAACCTTAGGAAAACTCAACAATCTTCAATCTTTGGATCTTAGCAGAAACAAAATCAGTTCTCTGCCTTCTGATTTTTGGAGTTTAACCTCTCTCAAGAGGCTTAACCTTTCTTCCAATCAGATTTCAGGTTCTTTGACTAACAACATTGGAAACTTTGGTTTGCTTGAAGCCATTGATTTGTCGAAAAACAGCTTCTCTGAGGAAATTCCTGAAGCTTTGAGTTCACTTGTGAGTTTGAAAGTTCTCAAACTTGCACACAACATGTTTGTTAAAAGTGTTCCTTCAGGGATTCTAAAGTGTCAGTCTTTAGTTTCGATTGATCTTTCGGAAAATCAGCTGAATGGAACACTTCCACATGGTTTTGGTGATGGTTTTCCTAATCTTAGGACATTGAATCTTGCTGAGAATAGTATCTTTGGTGGTGTCTCAGATTTTTCAGGGTTGAAGTCTATTGTGAGTCTTAACATATCAGGAAATTCATTTCAGGGTTCTGTTACAGATGTGTTTGAGTTGAAGTTGGAGGTTTTGGACCTTAGCAGAAACCAATTTCAAGGTCATATTTCTCAGGTAAACTACTACAATTGGTCTCATTTAGTTTATCTTGATTTATCAGAGAATCAGCTTAGTGGTGAAATTTTCCAAAACTTTAACAGTTCGCCGAATTTAAAGCACCTTAATCTTGCATGCAATAGATTTACAACACAGAAATTCCCACAAATTGAAATGCTCTTAGGATTGGAATATCTGAACTTGTCGAAAACTAGTCTTGTTGGTCACATTCCTGATGAAATCTCGCAACTTGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGGAGAATTCCCTTGCTTGTGAGTAAGCACCTCATAGTTATTGACCTTTCGCGCAACAATTTGAGTGGACCAGTCCCTCAAATTATCTTAAAGAATCTCCCGAAGATGAAGAGTTACAACTTCTCTTACAATAACTTAACCCTCTGTGCTTCAGAAATCAGACCTGAGATCCTGCAAACATTGTTCTATGGATCGGTTAACAGTTGTCCGATTGCTGCGAATCCGGGTCTTTTCAAAAGAAGAAGAAGAGATGCTAACCACAGGGGAATGAAGCTAGCTCTTGCATTAACCCTCTCGATGATATTAGCACTAGCTGGTGTTTTGTTTCTGGCATTCGGTTGCAGAAGGAAACAGAAAATGTGGGAAGTGAAACAAGGTTCATATAGAGAAGAACAGAATGTCTCCGGTCCATTTTCCTTCCAAACTGACTCAACAACTTGGGTTGCTGATGTCAAACAAGCAACATCAGTTCCAGTTGTAATCTTCGAGAAGCCGCTGTTGAATATAACTTTTGCAGACCTCTTATCTGCAACTTCAAATTTCGATAGAGGTACTCTTTTGGCTGAAGGAAAGTTTGGACCTGTTTATCGAGGCTTTCTACCTGGAAATATTCATGTGGCAGTAAAAGTTTTGGCTGTTGGTTCTACATTAACAGATGAAGAAGCCGCAAGAGAGCTTGAGTTTCTCGGTAGAATCAAACACCCTAATCTAGTTCCTTTAACCGGTTATTGTTTAGCTGGTGATCAAAGGATTGCTATATATGATTACATGGAGAACGGAAACTTGCAAAATCTTCTTTATGATTTGCCACTTGGGGTTCAAAGCACTGATGATTGGAGCACAGACACATGGGAAGAAGCTGCTGACAGTAATGGAATTCAGAATGTTGGTTCTGAAGGATTACTCACAACTTGGAGATTTCGACACAAGATCGCGCTTGGAACTGCAAGAGCATTGGCATTTCTGCATCATGGATGCTCTCCTCCAATAACTCATAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGATTATGATTTGGAGCCAAGGTTGTCTGATTTTGGTCTTGCCAAGATTTTCGGAAGCGGTTTAGACGAAGAGATTGCTCGTGGCTCGCCCGGTTATGTTCCGCCGGAGTTTTCTCTACCAGAATTTGAGTCACCAACGCCGAAATCTGATGTATATTGTTTTGGTGTTGTTCTATTCGAGCTATTAACTGGAAAGAAACCGGTTGAAGATGATTATAGTGATGATAAAGAAGCAACGAGTTTGGTAAGTTGGGCTAGAGGACTTGTAAGGAAGAATCAAACTTCAAGGGCTATTGATCCGAAAATTCGCGATACGGGATTGGATGAACAAATGGAGGAGGCTATAAAGATTGGATATCTATGCACAGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACAACTAACTAG 2568 0.3921 MGLGVFGSVLVLTFLFKHLASQQPNTDEFYVSDFLKKMGLPPSSKVYDFSSSVCSWKGVFCDANKQHVIELSFSGIGLTGPIPETTLGKLNNLQSLDLSRNKISSLPSDFWSLTSLKRLNLSSNQISGSLTNNIGNFGLLEAIDLSKNSFSEEIPEALSSLVSLKVLKLAHNMFVKSVPSGILKCQSLVSIDLSENQLNGTLPHGFGDGFPNLRTLNLAENSIFGGVSDFSGLKSIVSLNISGNSFQGSVTDVFELKLEVLDLSRNQFQGHISQVNYYNWSHLVYLDLSENQLSGEIFQNFNSSPNLKHLNLACNRFTTQKFPQIEMLLGLEYLNLSKTSLVGHIPDEISQLGNLNALDLSMNHLDGRIPLLVSKHLIVIDLSRNNLSGPVPQIILKNLPKMKSYNFSYNNLTLCASEIRPEILQTLFYGSVNSCPIAANPGLFKRRRRDANHRGMKLALALTLSMILALAGVLFLAFGCRRKQKMWEVKQGSYREEQNVSGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLAVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCLAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEAADSNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPITHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSLPEFESPTPKSDVYCFGVVLFELLTGKKPVEDDYSDDKEATSLVSWARGLVRKNQTSRAIDPKIRDTGLDEQMEEAIKIGYLCTADLPFKRPTMQQIVGLLKDIEPTTN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00327 855 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 107 202 - -
Vivi1g00327 855 Pfam Protein kinase domain 551 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00327 855 FunFam Calmodulin-binding receptor kinase CaMRLK 255 371 - -
Vivi1g00327 855 SMART LRR_typ_2 233 256 IPR003591 -
Vivi1g00327 855 SMART LRR_typ_2 90 112 IPR003591 -
Vivi1g00327 855 SMART LRR_typ_2 161 185 IPR003591 -
Vivi1g00327 855 SMART LRR_typ_2 113 137 IPR003591 -
Vivi1g00327 855 SMART LRR_typ_2 352 376 IPR003591 -
Vivi1g00327 855 Pfam Leucine Rich repeat 304 318 IPR001611 GO:0005515
Vivi1g00327 855 Gene3D Ribonuclease Inhibitor 35 178 IPR032675 -
Vivi1g00327 855 Gene3D Ribonuclease Inhibitor 179 274 IPR032675 -
Vivi1g00327 855 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 211 850 - -
Vivi1g00327 855 Gene3D Ribonuclease Inhibitor 275 438 IPR032675 -
Vivi1g00327 855 SUPERFAMILY Protein kinase-like (PK-like) 524 847 IPR011009 -
Vivi1g00327 855 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Vivi1g00327 855 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Vivi1g00327 855 PRINTS Leucine-rich repeat signature 93 106 - -
Vivi1g00327 855 PRINTS Leucine-rich repeat signature 352 365 - -
Vivi1g00327 855 Pfam Leucine rich repeat 187 245 IPR001611 GO:0005515
Vivi1g00327 855 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515
Vivi1g00327 855 ProSiteProfiles Protein kinase domain profile. 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00327 855 Gene3D Transferase(Phosphotransferase) domain 1 623 855 - -
Vivi1g00327 855 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Vivi1g00327 855 SUPERFAMILY L domain-like 44 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00327 Vivi-Chr1 6206635 6209787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00327 63 851 Receptor kinase-like Gene Family AT4G39400 33.005 9.04e-107 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vivi1g00327 Pkinase 1.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00327 - - gmx:100797738 1382.85