Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00321 ATGGCTATGCTCCGCAAGTTATTCTTTCGTAAGCCTCCTGACGGTCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGTTTCACTACGGAAGCTTGGAATGTAGAGAAATACAAAGTGTATGTGGATGGTATAGTTGGTGAGCTTAGAGAGAATGTGCCTGATGCTTCTATTATGGTTTTCAATTTTCGCGAGGAACAGACGAAAAGTTTAATGGCAAACGTGATGTCTGAGTATGATATTACTATAATGGACTATCCTAGACATTATGAAGGTTGTCCTGTTCTCAAAATGGAGCTAGTTCATCACTTTTTAAGGTCTAGTGAAAGCTGGCTCTCGCTGGGTCAGCACAATGTGTTGTTGATGCACTGTGAACGAGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCGTTGTTGATTTTTAGGAAGGTTTATAGTGGGGAGCATAGGACTTTGGATATGGTTTATCGGCAGTCCCCGCACGAGCTTTTGCATTTGTTGACGCCATTGAATCCAATTCCTTCCCAATTGAGGTATCTGCAGTATGTTTCTAGGAGGAATGTGGCCTTAGATTGGCCTCCGCTCGACAGAGCACTCATGTTGGACTGTATTATACTCAGATTCTTCCCAAACTTTGATGGGAAAGGCGGTTGTCATCCCTTGTTTAGAATTTATGGACAGGATCCTTTTAGTGCAGATAAAAGTTCTAAAATGTTGTATTCAATGCCAAAGAGAAGCAAAAATATTCGGGCTTACAAGCAGGGAGAGTGCGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTGTTAACTTGAATGATGACCTGGAGCGTGAAATGATGATGTTCCGGGTCATGTTCAACACGGCTTTTGTTAGATCCAATATTCTGATGCTTAATCGCGATGAAATTGATGTTCTATGGGATGCCAGAGATCACTTTCCAAAGGATTTCAGAGCTGAGATTCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCAGATGGTAAATCATGTTTTGAGGAGAAAGAGGGACTGCCAATTGAAGCCTTTGCCAAGGTTCAAGAGATCTTTAGCCATGCGGACTGGATGAACCCAAAGGCAGATGCTGCACTAAATGTGCTCCAACATATAAGTACTTCCGCTATCATGAGTGATAAGTTGGATAAAGCTTCTGATCAGCACGTGGAAACTGCCACATTATTGCGTGAAACAGATCCAAAAACTCCTCAGAGGAAGAATTCATACGAAGCAATACAATCTTTATCCTCAACTAAGCGATTCCCAAATAATGATATGAGTGGAAAAGAAGATAGGACAAGCAAAGTAGATGCTATTCCACAGAGGGATGGTGCATCAGACATCATCTGTCGGGAGACAATCTGCTCACCCGAACGAAGTTTGAAATCCAGTAAATGTCCAACAGGGTCAACAAATCTTGACATAAAACTGCAGGCACCCAATCTTGCTTCACCTGGTTCTATGGATTCTTCTCTTTCCCCTGAAACACCTCCTCCGCGGCCTCCCTCACCTATCCGTGCTAAAGAAGTTCATGATTCTCCTCCTCACACAGAATCACCTCCTGATCATATTTTGCCTTTGCAATCAGGACATCAATCACAAGGCAGAAGTTATTCACCTACTTCTAGCTCTACACCTGGGAACCAACTTTTATCTGCGGTCCACAATAAGTCGCCACCAGCTGCCATTGTTTCACCTCCTTCACATTCAGCAGTTTCTTCAACTCAGCCGCCCCCTCCTCTTTCTTCCAAAACACCTTCAAATGAAATTCCTCCTGTCAAAACAAGACTTGAGTCTTCCCCTTCACAACCTCTAACTCCACCACATCCACCTACCCCCCCACTAAAAGATCACAAAATAGTTAGAGCAGAACCTCCATCACCACACCCTTCACAGCCTCCTCCAAAAAAGGAATTACATGTTGAAACTGAACCTCCTCCTGTTCCATCTCCTATGAATGAGAAGCCACGGGATGGAATTTCTCCTTCTCCACCTCCTCTAAAAGCAGAGCAACCTGTTAGGTTTAAGCCCCAGCCACCTCCACCACCACCTAGTCTTTCAAGGGAAGCTGCATGTCCTACACCACCCAGTCTTTCAAGGGAGGCTGCAAGTCCTACTATAGCACCACCAGCACCACCTCCGCCTCGTCTTTCAAGGGAAGCTGCGAGTCCTACTATAGGACCACCGGCACCTCCTCCACCTCCATCTGCAACACTTTCCTCCAGTAATCCTAATCCTTCATTGCAAAAGTGTCCTCCAGTTCCACCACCTCCAATTCCTTTTGGTAAAGAAGGTCTAAAACCAGGCGGTGGTTTTCCAATGTCTCTTTCTGTGGGAGGTGATGCAAATAATGTCTCAGGCACATCAGGAAATCAATCTAGTTCACTAACAGGCTCAAAGGGACGAGTTCTATCAAAGAATAACTCCAAAAAGTTGAAACCATTGCATTGGATGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGATGAGACGCAAAAATCTGGCGAAGCTTCCAAAGCTCCAGAGATTGATATGTCAGAGCTTGAGAATCTTTTCTCGGCAGCAGCCCCGAGTTCAGGCCTTGCCAAAAAGTCAAATGTCCAAAGTTCAGTTAGGCCTAAATCTGAGAAAGTGCAACTGATTGAGCATAGGCGGGCTTGTAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCATTGCATGATTTAATGAGTTCAGTGCTAGCACTGGAAGAGTCGCTTGACGTTGATCAGGTTGAGAACCTCATAAAATTTTGTCCTACAAAAGAGGAGATGGAAATAATCAAGAGTTATAACGGGGAAAAGGAAAAGTTAGGGAGATGTGAACAGTTCTTCATGGAGTTAATGAAAGTACCACGGGTAGAATCTAAGCTCAGAGTATTTTTATTCAAGATTCAGTTCCATTCTCAGGTTTCCGATCTTAAAAATAGCTTGAATGCTGTGAATGCTGCTTCAGAAGAGATCAGGAGTTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGATTACAATAAAGAGAAGGTGATGAATGAGTTAAATTCAGACTGA 3165 0.4341 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTEAWNVEKYKVYVDGIVGELRENVPDASIMVFNFREEQTKSLMANVMSEYDITIMDYPRHYEGCPVLKMELVHHFLRSSESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIFRKVYSGEHRTLDMVYRQSPHELLHLLTPLNPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGKGGCHPLFRIYGQDPFSADKSSKMLYSMPKRSKNIRAYKQGECELIKIDINCHIQGDVVIEGVNLNDDLEREMMMFRVMFNTAFVRSNILMLNRDEIDVLWDARDHFPKDFRAEILFSEMDAAAAVIADGKSCFEEKEGLPIEAFAKVQEIFSHADWMNPKADAALNVLQHISTSAIMSDKLDKASDQHVETATLLRETDPKTPQRKNSYEAIQSLSSTKRFPNNDMSGKEDRTSKVDAIPQRDGASDIICRETICSPERSLKSSKCPTGSTNLDIKLQAPNLASPGSMDSSLSPETPPPRPPSPIRAKEVHDSPPHTESPPDHILPLQSGHQSQGRSYSPTSSSTPGNQLLSAVHNKSPPAAIVSPPSHSAVSSTQPPPPLSSKTPSNEIPPVKTRLESSPSQPLTPPHPPTPPLKDHKIVRAEPPSPHPSQPPPKKELHVETEPPPVPSPMNEKPRDGISPSPPPLKAEQPVRFKPQPPPPPPSLSREAACPTPPSLSREAASPTIAPPAPPPPRLSREAASPTIGPPAPPPPPSATLSSSNPNPSLQKCPPVPPPPIPFGKEGLKPGGGFPMSLSVGGDANNVSGTSGNQSSSLTGSKGRVLSKNNSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDMSELENLFSAAAPSSGLAKKSNVQSSVRPKSEKVQLIEHRRACNCEIMLSKVKVPLHDLMSSVLALEESLDVDQVENLIKFCPTKEEMEIIKSYNGEKEKLGRCEQFFMELMKVPRVESKLRVFLFKIQFHSQVSDLKNSLNAVNAASEEIRSSVKLKRIMQTILTLGNALNQGTARDYNKEKVMNELNSD 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00321 1054 Gene3D Formin, FH2 domain 822 1045 IPR042201 -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 797 823 - -
Vivi1g00321 1054 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vivi1g00321 1054 ProSiteProfiles Formin homology-2 (FH2) domain profile. 820 1054 IPR015425 -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 498 828 - -
Vivi1g00321 1054 SMART PTEN_C2_2 197 336 IPR014020 -
Vivi1g00321 1054 Pfam Formin Homology 2 Domain 825 1040 IPR015425 -
Vivi1g00321 1054 Gene3D - 199 340 - -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 430 458 - -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 605 620 - -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 544 573 - -
Vivi1g00321 1054 SUPERFAMILY Formin homology 2 domain (FH2 domain) 895 1041 - -
Vivi1g00321 1054 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 662 708 - -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 724 758 - -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 766 781 - -
Vivi1g00321 1054 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Vivi1g00321 1054 PANTHER FORMIN-J 1 703 - -
Vivi1g00321 1054 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Vivi1g00321 1054 MobiDBLite consensus disorder prediction 442 456 - -
Vivi1g00321 1054 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00321 Vivi-Chr1 6118423 6127115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00321 1 403 Protein tyrosine phosphatase (PTP) family AT5G58160 64.851 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00321 - - lja:Lj4g3v1983370.1 1409.43