Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00319 ATGGCTATGCTCCGCAAGTTATTCTTTCGTAAGCCTCCTGACGGTCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGTTTCACTACGGAAGCTTGGAATGTAGAGAAATACAAAGTGTATGTGGATGGTATAGTTGGTGAGCTTAGAGAGAATGTGCCTGATGCTTCTATTATGGTTTTCAATTTTCGCGAGGAACAGACGAAAAGTTTAATGGCAAACGTGATGTCTGAGTATGATATTACTATAATGGACTATCCTAGACATTATGAAGGTTGTCCTGTTCTCAAAATGGAGCTAGTTCATCACTTTTTAAGGTCTAGTGAAAGCTGGCTCTCGCTGGGTCAGCACAATGTGTTGTTGATGCACTGTGAACGAGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCGTTGTTGATTTTTAGGAAGGTTTATAGTGGGGAGCATAGGACTTTGGATATGGTTTATCGGCAGTCCCCGCACGAGCTTTTGCATTTGTTGACGCCATTGAATCCAATTCCTTCCCAATTGAGGTATCTGCAGTATGTTTCTAGGAGGAATGTGGCCTTAGATTGGCCTCCGCTCGACAGAGCACTCATGTTGGACTGTATTATACTCAGATTCTTCCCAAACTTTGATGGGAAAGGCGGTTGTCATCCCTTGTTTAGAATTTATGGACAGGATCCTTTTAGTGCAGATAAAAGTTCTAAAATGTTGTATTCAATGCCAAAGAGAAGCAAAAATATTCGGGCTTACAAGCAGGGAGAGTGCGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTGTTAACTTGAATGATGACCTGGAGCGTGAAATGATGATGTTCCGGGTCATGTTCAACACGGCTTTTGTTAGATCCAATATTCTGATGCTTAATCGCGATGAAATTGATGTTCTATGGGATGCCAGAGATCACTTTCCAAAGGATTTCAGAGCTGAGATTCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCAGATGGTAAATCATGTTTTGAGGAGAAAGAGGGACTGCCAATTGAAGCCTTTGCCAAGGTTCAAGAGATCTTTAGCCATGCGGACTGGATGAACCCAAAGGCAGATGCTGCACTAAATGTGCTCCAACATATAAGTACTTCCGCTATCATGAGTGATAAGTTGGATAAAGCTTCTGATCAGCACGTGGAAACTGCCACATTATTGCGTGAAACAGATCCAAAAACTCCTCAGAGGAAGAATTCATACGAAGCAATACAATCTTTATCCTCAACTAAGCGATTCCCAAATAATGATATGAGTGGAAAAGAAGATAGGACAAGCAAAGTAGATGCTATTCCACAGAGGGATGGTGCATCAGACATCATCTGTCGGGAGACAATCTGCTCACCCGAACGAAGTTTGAAATCCAGTAAATGTCCAACAGGGTCAACAAATCTTGACATAAAACTGCAGGCACCCAATCTTGCTTCACCTGGTTCTATGGATTCTTCTCTTTCCCCTGAAACACCTCCTCCGCGGCCTCCCTCACCTATCCGTGCTAAAGAAGTTCATGATTCTCCTCCTCACACAGAATCACCTCCTGATCATATTTTGCCTTTGCAATCAGGACATCAATCACAAGGCAGAAGTTATTCACCTACTTCTAGCTCTACACCTGGGAACCAACTTTTATCTGCGGTCCACAATAAGTCGCCACCAGCTGCCATTGTTTCACCTCCTTCACATTCAGCAGTTTCTTCAACTCAGCCGCCCCCTCCTCTTTCTTCCAAAACACCTTCAAATGAAATTCCTCCTGTCAAAACAAGACTTGAGTCTTCCCCTTCACAACCTCTAACTCCACCACATCCACCTACCCCCCCACTAAAAGATCACAAAATAGTTAGAGCAGAACCTCCATCACCACACCCTTCACAGCCTCCTCCAAAAAAGGAATTACATGTTGAAACTGAACCTCCTCCTGTTCCATCTCCTATGAATGAGAAGCCACGGGATGGAATTTCTCCTTCTCCACCTCCTCTAAAAGCAGAGCAACCTGTTAGGTTTAAGCCCCAGCCACCTCCACCACCACCTAGTCTTTCAAGGGAAGCTGCATGTCCTACACCACCCAGTCTTTCAAGGGAGGCTGCAAGTCCTACTATAGCACCACCAGCACCACCTCCGCCTCGTCTTTCAAGGGAAGCTGCGAGTCCTACTATAGGACCACCGGCACCTCCTCCACCTCCATCTGCAACACTTTCCTCCAGTAATCCTAATCCTTCATTGCAAAAGTGTCCTCCAGTTCCACCACCTCCAATTCCTTTTGGTAAAGAAGGTCTAAAACCAGGCGGTGGTTTTCCAATGTCTCTTTCTGTGGGAGGTGATGCAAATAATGTCTCAGGCACATCAGGAAATCAATCTAGTTCACTAACAGGCTCAAAGGGACGAGTTCTATCAAAGAATAACTCCAAAAAGTTGAAACCATTGCATTGGATGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGATGAGACGCAAAAATCTGGCGAAGCTTCCAAAGCTCCAGAGATTGATATGTCAGAGCTTGAGAATCTTTTCTCGGCAGCAGCCCCGAGTTCAGGCCTTGCCAAAAAGTCAAATGTCCAAAGTTCAGTTAGGCCTAAATCTGAGAAAGTGCAACTGATTGAGCATAGGCGGGCTTGTAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCATTGCATGATTTAATGAGTTCAGTGCTAGCACTGGAAGAGTCGCTTGACGTTGATCAGGTTGAGAACCTCATAAAATTTTGTCCTACAAAAGAGGAGATGGAAATAATCAAGAGTTATAACGGGGAAAAGGAAAAGTTAGGGAGATGTGAACAGTTCTTCATGGAGTTAATGAAAGTACCACGGGTAGAATCTAAGCTCAGAGTATTTTTATTCAAGATTCAGTTCCATTCTCAGGTTTCCGATCTTAAAAATAGCTTGAATGCTGTGAATGCTGCTTCAGAAGAGATCAGGAGTTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTAGATACCCTTCTTAAACTGACTGAGACACGTGCACGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTGTTAGATGAAAAATTACCAGAAGTTTTAGACTTCTCTAAGGATCTTGCTAATCTAGAGCCAGCGGCAAAGATCCAATTGAAGTTCCTGGCAGAGGAGATGCAAGCTATAAACAAAGGGTTAGAGAAAATTGTTCAGGAACTATCCACTTCTGAAAATGATGGTCCTATATCAGAAAAGTTCCGCAAGAAATTGAAAGACTTCCTATGTTCTGCTGAAGCTGAAGTTCGCGCACTGGCTTCACTATATTCTGGGGTGGGCAGGAACGTGGATGCATTAATTCTTTATTTTGGCGAAGATCCATCTCGCTGTCCATTTGAACAAGTTGTCACAACTTTGCTCAACTTCACTCAAATGTTCAACAAAGCCCACGAAGAAAACTGCAAACAGTTAGAGCTTGAAATGAAGAAAACAGCAGATAGTGAGAAAAAGAAATGTGAATCAGAGAGGATATTGCCTAAAGTAATCCGGACAGGCAATGTGAAATGA 3705 0.4302 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTEAWNVEKYKVYVDGIVGELRENVPDASIMVFNFREEQTKSLMANVMSEYDITIMDYPRHYEGCPVLKMELVHHFLRSSESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIFRKVYSGEHRTLDMVYRQSPHELLHLLTPLNPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGKGGCHPLFRIYGQDPFSADKSSKMLYSMPKRSKNIRAYKQGECELIKIDINCHIQGDVVIEGVNLNDDLEREMMMFRVMFNTAFVRSNILMLNRDEIDVLWDARDHFPKDFRAEILFSEMDAAAAVIADGKSCFEEKEGLPIEAFAKVQEIFSHADWMNPKADAALNVLQHISTSAIMSDKLDKASDQHVETATLLRETDPKTPQRKNSYEAIQSLSSTKRFPNNDMSGKEDRTSKVDAIPQRDGASDIICRETICSPERSLKSSKCPTGSTNLDIKLQAPNLASPGSMDSSLSPETPPPRPPSPIRAKEVHDSPPHTESPPDHILPLQSGHQSQGRSYSPTSSSTPGNQLLSAVHNKSPPAAIVSPPSHSAVSSTQPPPPLSSKTPSNEIPPVKTRLESSPSQPLTPPHPPTPPLKDHKIVRAEPPSPHPSQPPPKKELHVETEPPPVPSPMNEKPRDGISPSPPPLKAEQPVRFKPQPPPPPPSLSREAACPTPPSLSREAASPTIAPPAPPPPRLSREAASPTIGPPAPPPPPSATLSSSNPNPSLQKCPPVPPPPIPFGKEGLKPGGGFPMSLSVGGDANNVSGTSGNQSSSLTGSKGRVLSKNNSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDMSELENLFSAAAPSSGLAKKSNVQSSVRPKSEKVQLIEHRRACNCEIMLSKVKVPLHDLMSSVLALEESLDVDQVENLIKFCPTKEEMEIIKSYNGEKEKLGRCEQFFMELMKVPRVESKLRVFLFKIQFHSQVSDLKNSLNAVNAASEEIRSSVKLKRIMQTILTLGNALNQGTARGSAIGFRLDTLLKLTETRARNNKMTLMHYLCKVLDEKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKIVQELSTSENDGPISEKFRKKLKDFLCSAEAEVRALASLYSGVGRNVDALILYFGEDPSRCPFEQVVTTLLNFTQMFNKAHEENCKQLELEMKKTADSEKKKCESERILPKVIRTGNVK 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 498 828 - -
Vivi1g00319 1234 Coils Coil 1099 1119 - -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 430 458 - -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 605 620 - -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 544 573 - -
Vivi1g00319 1234 Coils Coil 1193 1213 - -
Vivi1g00319 1234 PANTHER FORMIN-J 1 1219 - -
Vivi1g00319 1234 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 724 758 - -
Vivi1g00319 1234 Pfam Formin Homology 2 Domain 825 1193 IPR015425 -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 766 781 - -
Vivi1g00319 1234 Gene3D - 199 340 - -
Vivi1g00319 1234 SMART it6_source 820 1234 IPR015425 -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 797 823 - -
Vivi1g00319 1234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Vivi1g00319 1234 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Vivi1g00319 1234 SMART PTEN_C2_2 197 336 IPR014020 -
Vivi1g00319 1234 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Vivi1g00319 1234 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Vivi1g00319 1234 ProSiteProfiles Formin homology-2 (FH2) domain profile. 820 1218 IPR015425 -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 662 708 - -
Vivi1g00319 1234 SUPERFAMILY Formin homology 2 domain (FH2 domain) 895 1212 - -
Vivi1g00319 1234 Gene3D Formin, FH2 domain 822 1203 IPR042201 -
Vivi1g00319 1234 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00319 Vivi-Chr1 6115686 6127113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00319 814 1217 Protein tyrosine phosphatase (PTP) family AT5G58160 73.594 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00319 - - gmx:100786096 1738.39