Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00307 ATGTGTGATAAGGAAAAAGAGAGTTCTCACTCGGCTCTGCTCCACGGAAAATACGAGCTGGGTCGAGTTCTCGGCCACGGAACATTCGCGAAGGTTTACCACGCGCGAAACCTGAGCACAGGAAAAAACGTAGCCATGAAAGTAGTTGGAAAAGAAAAAGTGATAAAAGTTGGAATGATGGAACAAATCAAACGAGAAATCTCAGTGATGAAGATGGTGAAACACTCGAACATAGTTCAAATCCATGAAGTCATGGCTTCGAAGTCCAAGATCTACATCGCCATGGAACTCGTTCGTGGCGGTGAGCTTTTCAACAAGATCGTCAAAGGTCGGCTTAAAGAAGACGTTGCCAGAGTCTATTTTCAGCAGTTGATTTCCGCCGTTGATTTCTGTCATAGTCGCGGTGTTTACCACCGTGATCTCAAACCGGAGAATCTCCTCCTCGATGAAGAAGGTAATCTCAAGGTATCTGATTTTGGTCTCAGTACTTTCTCCGAGCATTTGAAACAAGATGGATTGCTTCATACTACTTGTGGTACTCCGGCGTATGTTTCGCCGGAGGTTATCGCGAAGAAAGGATACGACGGTGCTAAGGCGGATATTTGGTCTTGTGGCGTCATTCTGTATGTTCTTCTCGCTGGATTTTTACCGTTTCAGGATGATAATTTGGTGGCTATGTATAAGAAAATTTACCGAAGCGATTTCAAGTGTCCACCTTGGTTTTCTCTTGATGCGAGGAGGCTTATCACGAAGCTTCTAGATCCGAATCCGAATAGTAGAATTACTATATCACAGATAATGGATTCTTGTTGGTTTAAGAAACCGGTTCCGAAGAGTGTGGCGAGGAGGAAGAAAGAGAAGGAAGAGGAAGAAGAAGAGAAGGGATTCGGTTTTCTGGAGACGGAGAAATCGTCCATGACTCCGACGACAATGAATGCTTTTCATATAATATCATTATCGGAGGGGTTTGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAGAGAAGAGAGGGAGGAGATGAGATTTGCAACGGCGGGGACGGCGAGTGGAGTGATATCGAAATTGGAAGAAGTGGCGAAGGCTGTGAAGTTTGATGTGAAAAGCAGTGATACAAAGGTGAGGCTGCAGGGGCAGGAGAGAGGGAGGAAAGGGAAGTTGGCGATTGCGGCGGATATTTACGCGGTGACGCCGTCATTTTTGGTGGTGGAAGTTAAGAAAGATAAGGGGGATACGTTGGAGTATAATCAGTTCTGTAGTAAACAGCTTCGTCCTGCGCTTAAGGATATTTTCTGGACTTCTACTGATCCTCCAGCTGCTTGA 1320 0.4538 MCDKEKESSHSALLHGKYELGRVLGHGTFAKVYHARNLSTGKNVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHSNIVQIHEVMASKSKIYIAMELVRGGELFNKIVKGRLKEDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKVSDFGLSTFSEHLKQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRSDFKCPPWFSLDARRLITKLLDPNPNSRITISQIMDSCWFKKPVPKSVARRKKEKEEEEEEKGFGFLETEKSSMTPTTMNAFHIISLSEGFDLSPLFEEKKREEREEMRFATAGTASGVISKLEEVAKAVKFDVKSSDTKVRLQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDKGDTLEYNQFCSKQLRPALKDIFWTSTDPPAA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00307 439 CDD STKc_SnRK3 17 271 - -
Vivi1g00307 439 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vivi1g00307 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vivi1g00307 439 Gene3D Kinase associated domain 1, KA1 310 432 - -
Vivi1g00307 439 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Vivi1g00307 439 Gene3D Transferase(Phosphotransferase) domain 1 105 309 - -
Vivi1g00307 439 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Vivi1g00307 439 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00307 439 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00307 439 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Vivi1g00307 439 SUPERFAMILY Protein kinase-like (PK-like) 15 283 IPR011009 -
Vivi1g00307 439 FunFam Non-specific serine/threonine protein kinase 306 431 - -
Vivi1g00307 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 427 - -
Vivi1g00307 439 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00307 439 FunFam Non-specific serine/threonine protein kinase 8 296 - -
Vivi1g00307 439 Pfam NAF domain 308 367 IPR004041 GO:0007165
Vivi1g00307 439 CDD CIPK_C 312 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00307 Vivi-Chr1 5924684 5926650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00307 9 434 CBL-interacting serine-threonine protein kinases AT4G30960 75.638 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi1g00307 Pkinase 6.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00307 - K07198 var:108321114 709.138