Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00304 ATGCAACCTTGCAGCAGAGAAATGCAATCCCTCAACTCCCTTTTCAACTCTTCTTCTCCTCCTCCTCAAATCCCCATTCCTCTCCAAAACCACCCACAGATCCAAATCAACAACAACGACAACACATTCCAACAACAAGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCCCCTTCCTCTCCCTGGAACAACAACCCTAAACCCTTATGGGACCCTAACTCCGACGAAACTCTCACTTTCCCTTACGACGAACAAACCAACCTCTCCTCCAAGTTTCGTAACCACCAGATCACTGATAAAACCACCGCCGCCGCTCTCATGCTTCTCATGCCGAACGCCGCCGATTCCGGACTCCTACACTTGCCCGCTGACTTTGACTCCTCTCAAAACGACGTCGTGAACGCTTCTTCCGCTGGTGACGGTTCCGTTCAAGCTCTCTATAACGGTTTCTCCGGATCTCTCCATGGTGTCAACAATCAAACTCACCATTTTCAACCACCTCAGGTGCAAACTTTTGGAGGTGGTTCGGTAAGTGCGACAAACCAGGCTCCGGTGAGTGGTGCTCCTGCTCAGCCAAGGCAGAAGGTTAGGGCTAGGAGAGGTCAGGCTACTGATCCACACAGTATTGCCGAAAGGTTAAGGAGGGAAAGAATTGCTGAAAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAATAAGACAGATAAGGCCTCCATGCTAGATGAGATCATCGATTATGTCAAATTCCTACAAGTTCAAGTCAAGGTTTTGAGTATGAGTAGATTAGGCGGAGCAGCCGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTGTCAGTGACTGCGTCCAAGCTAACGGAAACGGTGGGGTCCACCCAAGAAACCCTAAAACGTCGTCGTCCAACGAGTCTCTCACAATGACAGAGCATCAGGTGGCGAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAATACTTACAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCTACCGCAATCTCAACTGCCACGTGTCACAACAGGAACCCTTTGATTAACGCTCCCAACAACAATATCAACGCTATCCCCGCATCCAACGGTGATGGGCCATCCTCACCCGGAATGTCCGTCAATAGCACCGTTAAAGATGCTAATTCCGCTTCTAAATCGTAG 1191 0.4971 MQPCSREMQSLNSLFNSSSPPPQIPIPLQNHPQIQINNNDNTFQQQDDFLKQMLSNLPPSSPWNNNPKPLWDPNSDETLTFPYDEQTNLSSKFRNHQITDKTTAAALMLLMPNAADSGLLHLPADFDSSQNDVVNASSAGDGSVQALYNGFSGSLHGVNNQTHHFQPPQVQTFGGGSVSATNQAPVSGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHPRNPKTSSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHNRNPLINAPNNNINAIPASNGDGPSSPGMSVNSTVKDANSASKS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00304 396 Pfam Helix-loop-helix DNA-binding domain 208 253 IPR011598 GO:0046983
Vivi1g00304 396 MobiDBLite consensus disorder prediction 294 308 - -
Vivi1g00304 396 FunFam Transcription factor bHLH66 200 265 - -
Vivi1g00304 396 Gene3D - 200 267 IPR036638 GO:0046983
Vivi1g00304 396 MobiDBLite consensus disorder prediction 1 19 - -
Vivi1g00304 396 MobiDBLite consensus disorder prediction 289 308 - -
Vivi1g00304 396 MobiDBLite consensus disorder prediction 368 396 - -
Vivi1g00304 396 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 346 - -
Vivi1g00304 396 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g00304 396 SMART finulus 209 258 IPR011598 GO:0046983
Vivi1g00304 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 252 IPR011598 GO:0046983
Vivi1g00304 396 MobiDBLite consensus disorder prediction 172 189 - -
Vivi1g00304 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 263 IPR036638 GO:0046983
Vivi1g00304 396 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00304 Vivi-Chr1 5799971 5803370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00304 189 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 67.980 5.44e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g00304 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00304 - - psat:127138414 624.394