Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00303 ATGCAACCTTGCAGCAGAGAAATGCAATCCCTCAACTCCCTTTTCAACTCTTCTTCTCCTCCTCCTCAAATCCCCATTCCTCTCCAAAACCACCCACAGATCCAAATCAACAACAACGACAACACATTCCAACAACAAGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCCCCTTCCTCTCCCTGGAACAACAACCCTAAACCCTTATGGGACCCTAACTCCGACGAAACTCTCACTTTCCCTTACGACGAACAAACCAACCTCTCCTCCAAGTTTCGTAACCACCAGATCACTGATAAAACCACCGCCGCCGCTCTCATGCTTCTCATGCCGAACGCCGCCGATTCCGGACTCCTACACTTGCCCGCTGACTTTGACTCCTCTCAAAACGACGTCGTGAACGCTTCTTCCCTTTTACAGGCTGGTGACGGTTCCGTTCAAGCTCTCTATAACGGTTTCTCCGGATCTCTCCATGGTGTCAACAATCAAACTCACCATTTTCAACCACCTCAGGTGCAAACTTTTGGAGGTGGTTCGGTAAGTGCGACAAACCAGGCTCCGGTGAGTGGTGCTCCTGCTCAGCCAAGGCAGAAGGTTAGGGCTAGGAGAGGTCAGGCTACTGATCCACACAGTATTGCCGAAAGGTTAAGGAGGGAAAGAATTGCTGAAAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAATAAGACAGATAAGGCCTCCATGCTAGATGAGATCATCGATTATGTCAAATTCCTACAAGTTCAAGTCAAGGTTTTGAGTATGAGTAGATTAGGCGGAGCAGCCGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTGTCAGTGACTGCGTCCAAGCTAACGGAAACGGTGGGGTCCACCCAAGAAACCCTAAAACGTCGTCGTCCAACGAGTCTCTCACAATGACAGAGCATCAGGTGGCGAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAATACTTACAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCTACCGCAATCTCAACTGCCACGTGTCACAACAGGAACCCTTTGATTAACGCTCCCAACAACAATATCAACGCTATCCCCGCATCCAACGGTGATGGGCCATCCTCACCCGGAATGTCCGTCAATAGCACCGTTAAAGATGCTAATTCCGCTTCTAAATCGTAG 1200 0.4958 MQPCSREMQSLNSLFNSSSPPPQIPIPLQNHPQIQINNNDNTFQQQDDFLKQMLSNLPPSSPWNNNPKPLWDPNSDETLTFPYDEQTNLSSKFRNHQITDKTTAAALMLLMPNAADSGLLHLPADFDSSQNDVVNASSLLQAGDGSVQALYNGFSGSLHGVNNQTHHFQPPQVQTFGGGSVSATNQAPVSGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHPRNPKTSSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHNRNPLINAPNNNINAIPASNGDGPSSPGMSVNSTVKDANSASKS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00303 399 MobiDBLite consensus disorder prediction 175 192 - -
Vivi1g00303 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 349 - -
Vivi1g00303 399 MobiDBLite consensus disorder prediction 175 209 - -
Vivi1g00303 399 MobiDBLite consensus disorder prediction 371 399 - -
Vivi1g00303 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Vivi1g00303 399 Gene3D - 203 270 IPR036638 GO:0046983
Vivi1g00303 399 SMART finulus 212 261 IPR011598 GO:0046983
Vivi1g00303 399 FunFam Transcription factor bHLH66 203 268 - -
Vivi1g00303 399 MobiDBLite consensus disorder prediction 1 19 - -
Vivi1g00303 399 Pfam Helix-loop-helix DNA-binding domain 211 256 IPR011598 GO:0046983
Vivi1g00303 399 MobiDBLite consensus disorder prediction 297 311 - -
Vivi1g00303 399 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g00303 399 MobiDBLite consensus disorder prediction 292 311 - -
Vivi1g00303 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 266 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00303 Vivi-Chr1 5799971 5803372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00303 192 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 68.627 5.26e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g00303 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00303 - - psat:127138414 634.795