Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00292 ATGTCTATTAGAAAACCCCCATTCCCTCGACTCCTCCTTAACAATGTCTCTTGCATGAGAAACGCCCAACAAATTCTGTCTCATGTGAATGTGTCTCTTCATGATGGAGGGGCACTTGTCCTAACAGGTGCAAATGGCTCAGGAAAGACAACTTTTATGCGCATGCTAGCTGGGTTTTCCCGTCCTTCTGCAGGCGAAATCCTTTGGAATGGCCATGATATTCAAAAATCTTTGATCTTCCAACAGTATAAGCTTCAGCTTAACTGGGTCTCCCTCAAGAACGCAATTAAAGAAAAGTTCACCGTTCTAGAAAACATTCAGTGGTTTGAACTTCTTGAAGGCAAGCAAGGGAAAGCCATGCCTGCACTTGAGTTGATGGGACTAGGAAAATTGGCTAAGGAAAAGCCAAAGATGCTTTCAAGTGGCCAGCAGAGAAGATTGCAACTTGCCAGACTGCTCGCAATTGATCGCCCCATTTGGTTGCTAGACGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTAGAGTACATTATTGCCGAACACAGGAAACAGGGAGGAATCGTGATTGTGGCGACTCATTTACCCATTGAGATAGAAGATTCCATGGTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGTCACATACAGATATGCTTGGCCGCTTGGATATTAGTTAA 690 0.4449 MSIRKPPFPRLLLNNVSCMRNAQQILSHVNVSLHDGGALVLTGANGSGKTTFMRMLAGFSRPSAGEILWNGHDIQKSLIFQQYKLQLNWVSLKNAIKEKFTVLENIQWFELLEGKQGKAMPALELMGLGKLAKEKPKMLSSGQQRRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMVLRLPPRFPRRMSHTDMLGRLDIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00292 229 Gene3D - 8 209 IPR027417 -
Vivi1g00292 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Vivi1g00292 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Vivi1g00292 229 SMART AAA_5 35 223 IPR003593 GO:0016887
Vivi1g00292 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Vivi1g00292 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 203 IPR027417 -
Vivi1g00292 229 ProSitePatterns ABC transporters family signature. 139 153 IPR017871 GO:0005524|GO:0016887
Vivi1g00292 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 222 IPR005895 GO:0017004|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00292 Vivi-Chr1 5726893 5732477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00292 24 223 Calmodulin-binding Proteins AT2G36910 25.806 1.77e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00292 - - tpra:123910081 401.749