Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00284 ATGGTTTCCGACAAGGGTTTGGTCTGTGAAGATGTTCTTCATGAACTTTTTCCTGTCGGAATGCATGTTCTTGCCGTTGATGATAGTCTAGTTTGTTTGAAACTGTTGGAGAATATGCTTCTCAAATGCCACTATAAAGTTACTACAACTACGGATTCGGTGAAAGCATTGGAAATGTTGAGGGAGAATAAAGATATGTTTGATTTGGTTATTTGTGACGTTAACATGCCTGAGATGGATGGATTCAAGCTTCTGAAGCAAGCTGGACAACTTGAGATGGATCTACCTTTTATCATGTTGTCGGGGCATGGTGATACGGAAAGCGTGATGAAAGGTGTGATGAACGGTGCGAGTGATTATATATTGAAACCGATACGAATGGAAGAGGTGAAGACTATTTGGCAACATGTTGTGAGAAAGAAGATTGATGGAAAAGATCTGCAGAAAAAAAAAATCGGCGATGTTGCTAGGGTATGTAGTCCTGATACAACATCTGATCAAAATGTTGCTGAGAAGGATCAAATTCCAGGACGAAAAAGAAAAGATCGAAGCGATTCTGAGGAAGATAATGATACGGATGGATCTACCGAGAAGAAGCCTCGTTTCGTTTGGGATAATGAGTTGCATAACAAATTTGTCGTTGCAGTGAATCAGCTTGGTTTTGACAAGGCATATCCTAAGAAAATACTCGAATTAATGAATATCGAAGGGCTTACGAGGGAGAATGTCGCTAGTCATTTGCAGAAATTCAGATTGAGCCTCAAAAGATCAGATAAACTGTTTAGAACTGATGCTACATTGGATTCTACTAGTCCTTATTTGCAAAAGGGTTCAGTAGGTGGAAGAAGGTTTATAAACAGCGCATTACCATCATATGCATCACCATCGTATGGATCCGGTCAATTAGTCTGTCGGCTAAACACGCCATCTGCATTGAACTTCAGAAGGACGAGTTATGGATCGGTGCCTTCGTATCAGTCACGGAACAACATTAATTGTTTCCAGATGCCAGTGGTTTCTTCAAATGAAAGGTTGAGTTTCTCACCGGACTTTCGAACATCAACTGGGACGAATCAATTTCAGCAAAATAATTATCGAACTGGTTATTCGAAGTTAAGCTCAATTGAGGATCCGAAGGGTTTTGCAGCTTCTTCAAGCTTCCAAGGCTTTAAAGTTGCGGTTAATAATGCAAATAGCAGTTTGGTTTCTTGCGTCCCAAGCATTCATCATCCAGTAACCTATAATGTAAATAGCAGTTCCTTTTCTTGCATCCCAAGCAATCAACCATTGACACATAACTTAGAACAATCTTTGAACAACACTTTGGATTCGGTCGTTGTGAAAACACAATCTCCGAACAACACTTTGGATTCACTTGGAGTTGCAGATATGAAAACAGAATCTCAATCTATGATCAATCCTTTCGATTCTGCTCCGTCTCTAGCCAAACCCGATAGCCTACTAATCACTCAGATGCCGGAAACGGAGAAATTCTATACAGATCCAGAAGCTATGAATTCAAATGATGATTGCTTCTATAATCAAATGTTGTCTCTACAACCAGGCTTCTTCGACAAAGGTTGCGTGTCCTTGGACGACATATATTTAAGTTAA 1614 0.399 MVSDKGLVCEDVLHELFPVGMHVLAVDDSLVCLKLLENMLLKCHYKVTTTTDSVKALEMLRENKDMFDLVICDVNMPEMDGFKLLKQAGQLEMDLPFIMLSGHGDTESVMKGVMNGASDYILKPIRMEEVKTIWQHVVRKKIDGKDLQKKKIGDVARVCSPDTTSDQNVAEKDQIPGRKRKDRSDSEEDNDTDGSTEKKPRFVWDNELHNKFVVAVNQLGFDKAYPKKILELMNIEGLTRENVASHLQKFRLSLKRSDKLFRTDATLDSTSPYLQKGSVGGRRFINSALPSYASPSYGSGQLVCRLNTPSALNFRRTSYGSVPSYQSRNNINCFQMPVVSSNERLSFSPDFRTSTGTNQFQQNNYRTGYSKLSSIEDPKGFAASSSFQGFKVAVNNANSSLVSCVPSIHHPVTYNVNSSSFSCIPSNQPLTHNLEQSLNNTLDSVVVKTQSPNNTLDSLGVADMKTESQSMINPFDSAPSLAKPDSLLITQMPETEKFYTDPEAMNSNDDCFYNQMLSLQPGFFDKGCVSLDDIYLS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00284 537 FunFam Two-component response regulator 195 258 - -
Vivi1g00284 537 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 358 IPR045279 GO:0009736
Vivi1g00284 537 MobiDBLite consensus disorder prediction 172 200 - -
Vivi1g00284 537 Pfam Myb-like DNA-binding domain 204 249 IPR001005 -
Vivi1g00284 537 PIRSF RR_ARR_type-B 2 522 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi1g00284 537 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Vivi1g00284 537 Gene3D - 21 194 - -
Vivi1g00284 537 MobiDBLite consensus disorder prediction 158 200 - -
Vivi1g00284 537 SUPERFAMILY CheY-like 20 141 IPR011006 -
Vivi1g00284 537 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Vivi1g00284 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Vivi1g00284 537 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vivi1g00284 537 Gene3D - 195 257 - -
Vivi1g00284 537 SMART REC_2 21 134 IPR001789 GO:0000160
Vivi1g00284 537 CDD REC_typeB_ARR-like 23 138 - -
Vivi1g00284 537 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00284 Vivi-Chr1 5614000 5616189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00284 17 318 Response Regulator Gene Family AT2G25180 50.784 1.11e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi1g00284 Response_reg 3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00284 - K14491 vvo:131658286 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00284 1 5614000 5616189 Vivi1g00284 1 5614000 5616189 ECH