Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00283 ATGGTTTCCGACAAGGGTTTGGTCTGTGAAGATGTTCTTCATGAACTTTTTCCTGTCGGAATGCATGTTCTTGCCGTTGATGATAGTCTAGTTTGTTTGAAACTGTTGGAGAATATGCTTCTCAAATGCCACTATAAAGTTACTACAACTACGGATTCGGTGAAAGCATTGGAAATGTTGAGGGAGAATAAAGATATGTTTGATTTGGTTATTTGTGACGTTAACATGCCTGAGATGGATGGATTCAAGCTTCTGAAGCAAGCTGGACAACTTGAGATGGATCTACCTTTTATCATGTTGTCGGGGCATGGTGATACGGAAAGCGTGATGAAAGGTGTGATGAACGGTGCGAGTGATTATATATTGAAACCGATACGAATGGAAGAGGTGAAGACTATTTGGCAACATGTTGTGAGAAAGAAGATTGATGGAAAAGATCTGCAGAAAAAAAAAATCGGCGATGTTGCTAGGGTATGTAGTCCTGATACAACATCTGATCAAAATGTTGCTGAGAAGGATCAAATTCCAGGACGAAAAAGAAAAGATCGAAGCGATTCTGAGGAAGATAATGATACGGATGGATCTACCGAGAAGAAGCCTCGTTTCGTTTGGGATAATGAGTTGCATAACAAATTTGTCGTTGCAGTGAATCAGCTTGGTTTTGACAAGGCATATCCTAAGAAAATACTCGAATTAATGAATATCGAAGGGCTTACGAGGGAGAATGTCGCTAGTCATTTGCAGAAATTCAGATTGAGCCTCAAAAGATCAGATAAACTGTTTAGAACTGATGCTACATTGGATTCTACTAGTCCTTATTTGCAAAAGGGTTCAGTAGGTGGAAGAAGGTTTATAAACAGCGCATTACCATCATATGCATCACCATCGTATGGATCCGGTCAATTAGTCTGTCGGCTAAACACGCCATCTGCATTGAACTTCAGAAGGACGAGTTATGGATCGGTGCCTTCGTATCAGTCACGGAACAACATTAATTGTTTCCAGATGCCAGTGGTTTCTTCAAATGAAAGGTTGAGTTTCTCACCGGACTTTCGAACATCAACTGGGACGAATCAATTTCAGCAAAATAATTATCGAACTGGTTATTCGAAGTTAAGCTCAATTGAGGATCCGAAGGGTTTTGCAGCTTCTTCAAGCTTCCAAGGCTTTAAAGTTGCGGTTAATAATGCAAATAGCAGTTTGGTTTCTTGCGTCCCAAGCATTCATCATCCAGTAGCAGACTATGAAGCTTCTAACTGA 1260 0.4032 MVSDKGLVCEDVLHELFPVGMHVLAVDDSLVCLKLLENMLLKCHYKVTTTTDSVKALEMLRENKDMFDLVICDVNMPEMDGFKLLKQAGQLEMDLPFIMLSGHGDTESVMKGVMNGASDYILKPIRMEEVKTIWQHVVRKKIDGKDLQKKKIGDVARVCSPDTTSDQNVAEKDQIPGRKRKDRSDSEEDNDTDGSTEKKPRFVWDNELHNKFVVAVNQLGFDKAYPKKILELMNIEGLTRENVASHLQKFRLSLKRSDKLFRTDATLDSTSPYLQKGSVGGRRFINSALPSYASPSYGSGQLVCRLNTPSALNFRRTSYGSVPSYQSRNNINCFQMPVVSSNERLSFSPDFRTSTGTNQFQQNNYRTGYSKLSSIEDPKGFAASSSFQGFKVAVNNANSSLVSCVPSIHHPVADYEASN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00283 419 SUPERFAMILY CheY-like 20 141 IPR011006 -
Vivi1g00283 419 FunFam Two-component response regulator 195 258 - -
Vivi1g00283 419 Gene3D - 196 257 - -
Vivi1g00283 419 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 324 IPR045279 GO:0009736
Vivi1g00283 419 MobiDBLite consensus disorder prediction 172 200 - -
Vivi1g00283 419 PIRSF RR_ARR_type-B 2 412 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi1g00283 419 Pfam Myb-like DNA-binding domain 204 249 IPR001005 -
Vivi1g00283 419 Gene3D - 21 195 - -
Vivi1g00283 419 MobiDBLite consensus disorder prediction 158 200 - -
Vivi1g00283 419 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Vivi1g00283 419 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Vivi1g00283 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vivi1g00283 419 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Vivi1g00283 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Vivi1g00283 419 SMART REC_2 21 134 IPR001789 GO:0000160
Vivi1g00283 419 CDD REC_typeB_ARR-like 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00283 Vivi-Chr1 5609120 5610955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00283 17 318 Response Regulator Gene Family AT2G25180 50.784 1.81e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi1g00283 Response_reg 2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00283 K14491 - vvo:131657634 837.41