Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00271 ATGCTGTGGCAGAAATATGGTCTTGACAAGAGGAATGATTATGATGGAGAAAGAAATATTTTTGTGTTTGATCTTGGGGGTGGCACGTTTGATGTGTCTATACTAACTATTAAAGGCGATGTGTTCAAAGTTAAAGCAACTGCTGGAAACACTCACCTTGGTGGAGAAGACTTTGATAATAGAATGGTGAACTACTTTGTACAAGAGTTCAAGAAAAAGAACAAACTGGATATTAGTGGAAATCCAAAAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAGGGCAAAAAGATTACTATCTTTTCTTGTTGTTGCAACTATTGAGGTAGATTCTTTATTTCAAGGCATTGATTTTTCTTCATCGATCAATCGGGCGAAGTTTGAGGAAATGAATATGGATTTTCTTAATGAGTGTATAAAGACAGTTGAGAGTTGTCTAATGGATGCAAAAATGGACAGGAGTACTATAGATGAAGTTGTACTTGGGAAAGAGTTGTGCAAGAGCATTAACCCTGACGAGGCTGTAGCTTATGGTGCAGCTGTTCAGGCTGCATTGTTGAGCGAGGGCTTTAATAATGTTCCAAAGTTGGTTCTACAGGATGTTACACCGTTGTCTCTTGGCAGGTCAATTGTAGGAGATATCATGGATGTGGTGATTCCTAGAAACACCTGCATTCCTGTCAAGGAAACAAAATCATATGTTACATCCGAAGATAACCAGACCAGTTCTCTGATTGAGGTTTATGAGGCTCCTCGTGGTTCCCCGTCATCAGATGTCTCTTTTTCTATAGATGAAAATGGTATTTTCACTGTTTCTGCTGAGAATTTTGCTTTGGGAAATTCAAACGAGATTACAATAACAAATTACAAAGAAAGGATGTCAGCTGAAGAAATTAAAAAATTGATTAAAGAAGCTGAGAATTACGGTATTGAAGACAAGAAATTCTTAAGGAAGGCCGAAGTAGTGAATGGAACGGACCTCTACATTTACAAAATGATGAATACTTTAAAGAAAAAGGATATTAACTCGAAGCTTTGCTCACAAGAAATAAAAAAGATTGAAGATGCAATTGCAGTGGCCAAAAAATTGGTTGATGAGAATAAGCAAGATGTTGAAATAGATGTTCTGGAGGATCATCTAAATGGGCTTGAGATCAGGATGGAACACATTATAGCTAAGACTGTTTAG 1188 0.3746 MLWQKYGLDKRNDYDGERNIFVFDLGGGTFDVSILTIKGDVFKVKATAGNTHLGGEDFDNRMVNYFVQEFKKKNKLDISGNPKALRRLRTACERAKRLLSFLVVATIEVDSLFQGIDFSSSINRAKFEEMNMDFLNECIKTVESCLMDAKMDRSTIDEVVLGKELCKSINPDEAVAYGAAVQAALLSEGFNNVPKLVLQDVTPLSLGRSIVGDIMDVVIPRNTCIPVKETKSYVTSEDNQTSSLIEVYEAPRGSPSSDVSFSIDENGIFTVSAENFALGNSNEITITNYKERMSAEEIKKLIKEAENYGIEDKKFLRKAEVVNGTDLYIYKMMNTLKKKDINSKLCSQEIKKIEDAIAVAKKLVDENKQDVEIDVLEDHLNGLEIRMEHIIAKTV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00271 395 Gene3D - 5 183 - -
Vivi1g00271 395 SUPERFAMILY Actin-like ATPase domain 15 187 IPR043129 -
Vivi1g00271 395 Gene3D Actin; Chain A, domain 4 54 137 - -
Vivi1g00271 395 PANTHER HEAT SHOCK PROTEIN 70KDA 5 356 IPR013126 GO:0005524|GO:0140662
Vivi1g00271 395 Gene3D - 11 166 - -
Vivi1g00271 395 Coils Coil 350 370 - -
Vivi1g00271 395 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 250 320 IPR029047 -
Vivi1g00271 395 FunFam Heat shock 70 kDa 54 137 - -
Vivi1g00271 395 Coils Coil 373 393 - -
Vivi1g00271 395 Pfam Hsp70 protein 246 386 IPR013126 GO:0005524|GO:0140662
Vivi1g00271 395 Pfam Hsp70 protein 6 161 IPR013126 GO:0005524|GO:0140662
Vivi1g00271 395 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 321 393 IPR029048 -
Vivi1g00271 395 PRINTS 70kDa heat shock protein signature 169 189 - -
Vivi1g00271 395 PRINTS 70kDa heat shock protein signature 254 270 - -
Vivi1g00271 395 PRINTS 70kDa heat shock protein signature 28 38 - -
Vivi1g00271 395 PRINTS 70kDa heat shock protein signature 195 214 - -
Vivi1g00271 395 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 192 324 IPR029047 -
Vivi1g00271 395 ProSitePatterns Heat shock hsp70 proteins family signature 2. 22 35 IPR018181 -
Vivi1g00271 395 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 187 249 IPR029047 -
Vivi1g00271 395 Gene3D - 321 395 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00271 Vivi-Chr1 5477219 5478529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00271 6 393 Calmodulin-binding Proteins AT3G12580 54.186 9.80e-148 431