Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00270 ATGCAAGTTGCCAAAGTTGCTAGGATACTGGCGGCCAAGCCAACCGGAGTTGAAGCGGAGCAGAGATCATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGTCATATGCTGGAAAGACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGCGAGTTCTCTCCGAAAGATTTTGACCTCATATTCATCTTGCAATAACCGTCAGACAGTGTTTGCCAGTGCATCTATACCACATCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAATGCAGTGGAGCCCATGCCATCTCGCCTATATCACAGATTTATAGTATGTGATATGAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTTGCATTATATTTGTTGGCGAGCAGTCTGAGAAGTCGAAAAAGACTGGAAATGCTCCATCCACATCCCTTGTGATTGATTTTCTAAAAACATCATATCATGGTTCTTTAGATATCATCCTTCTTGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGTGGATATCTTCTAGTGGCAACAGATGTAGCTGCTAGAGGAGTTGACATTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATTGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGATGTTAACTGTTCTGTCACAAGCATTATAATCTCTGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTGAAGAGCTTATTCCATAA 957 0.4169 MQVAKVARILAAKPTGVEAEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCHMLERQLFSLGTLRVLVVDEVDFIFNSSKQASSLRKILTSYSSCNNRQTVFASASIPHHNRFLNEAVQQKWTKRDVIHIHVNAVEPMPSRLYHRFIVCDMKRKLQTLLSLIQSDAPESCIIFVGEQSEKSKKTGNAPSTSLVIDFLKTSYHGSLDIILLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDIPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDVNCSVTSIIISEERFVLQRYENELRFVCEELIP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00270 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 301 IPR027417 -
Vivi1g00270 318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 132 IPR014001 -
Vivi1g00270 318 Gene3D - 146 315 IPR027417 -
Vivi1g00270 318 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 2 311 - -
Vivi1g00270 318 CDD SF2_C_DEAD 151 280 - -
Vivi1g00270 318 Pfam DEAD/DEAH box helicase 26 115 IPR011545 GO:0003676|GO:0005524
Vivi1g00270 318 Gene3D - 1 136 IPR027417 -
Vivi1g00270 318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 161 318 IPR001650 -
Vivi1g00270 318 SMART helicmild6 198 282 IPR001650 -
Vivi1g00270 318 Pfam Helicase conserved C-terminal domain 161 280 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00270 Vivi-Chr1 5459504 5470331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00270 2 316 Eukaryotic Initiation Factors Gene Family AT1G72730 25.938 4.31e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00270 - - mtr:120575731 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01758 2 81152972 81157712 Vivi1g00270 1 5459504 5470331 PCT