Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00269 ATGAACACTCACACTCTCTCACTCTCACGTCTTCTTCCTCTTCGCGTTCTTTCATCCCAAAACCCTAATTCTTCTTCTCGCTTCCCTCGTTCACCCAACAACTACCATTTTCTGAATTCACTCTCCTCCACTCACATCAACCGTTTCTCCATCTTCGCCACAACTCCACTAGCCATTGCAAATCCTTCTCCCACCATCCCTACAACGGATGATTCAATAACCAATCCCACTCTCAGAGACTTATGTCAACCTCATGTACCCGATCAATTACTGCAAAGAATGGAAGAGGTTGGATATGTCATGCCTACAGAGGTCCAGAAGCAAGCCTTGTCTCATCTTTTTTCTGGCCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTAACATACTTGCTTTTGATATATTCCATCATCAACACTAAAAAATCTTCCGTGCAAGCAATAGTTTTGGTGCCCACCCGTGAGCTTGGCATGCAAGTTGCCAAAGTTGCTAGGATACTGGCGGCCAAGCCAACCGGAGTTGAAGCGGAGCAGAGATCATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGTCATATGCTGGAAAGACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGCGAGTTCTCTCCGAAAGATTTTGACCTCATATTCATCTTGCAATAACCGTCAGACAGTGTTTGCCAGTGCATCTATACCACATCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAATGCAGTGGAGCCCATGCCATCTCGCCTATATCACAGATTTATAGTATGTGATATGAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTTGCATTATATTTGTTGGCGAGCAGTCTGAGAAGTCGAAAAAGACTGGAAATGCTCCATCCACATCCCTTGTGATTGATTTTCTAAAAACATCATATCATGGTTCTTTAGATATCATCCTTCTTGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGTGGATATCTTCTAGTGGCAACAGATGTAGCTGCTAGAGGAGTTGACATTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATTGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGATGTTAACTGTTCTGTCACAAGCATTATAATCTCTGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTGAAGAGCTTATTCCATAA 1437 0.4287 MNTHTLSLSRLLPLRVLSSQNPNSSSRFPRSPNNYHFLNSLSSTHINRFSIFATTPLAIANPSPTIPTTDDSITNPTLRDLCQPHVPDQLLQRMEEVGYVMPTEVQKQALSHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTKKSSVQAIVLVPTRELGMQVAKVARILAAKPTGVEAEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCHMLERQLFSLGTLRVLVVDEVDFIFNSSKQASSLRKILTSYSSCNNRQTVFASASIPHHNRFLNEAVQQKWTKRDVIHIHVNAVEPMPSRLYHRFIVCDMKRKLQTLLSLIQSDAPESCIIFVGEQSEKSKKTGNAPSTSLVIDFLKTSYHGSLDIILLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDIPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDVNCSVTSIIISEERFVLQRYENELRFVCEELIP 478
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00269 478 Pfam DEAD/DEAH box helicase 103 275 IPR011545 GO:0003676|GO:0005524
Vivi1g00269 478 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 292 IPR014001 -
Vivi1g00269 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 444 IPR027417 -
Vivi1g00269 478 Gene3D - 61 293 IPR027417 -
Vivi1g00269 478 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 73 470 - -
Vivi1g00269 478 Pfam Helicase conserved C-terminal domain 321 440 IPR001650 -
Vivi1g00269 478 CDD DEADc 90 285 - -
Vivi1g00269 478 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 478 IPR001650 -
Vivi1g00269 478 CDD SF2_C_DEAD 311 440 - -
Vivi1g00269 478 Gene3D - 306 475 IPR027417 -
Vivi1g00269 478 SMART helicmild6 358 442 IPR001650 -
Vivi1g00269 478 SMART ultradead3 98 313 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi1g00269 Vivi-Chr1 5459504 5470924 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00269 87 476 Eukaryotic Initiation Factors Gene Family AT1G72730 27.595 7.61e-31 121