Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00268 ATGAACACTCACACTCTCTCACTCTCACGTCTTCTTCCTCTTCGCGTTCTTTCATCCCAAAACCCTAATTCTTCTTCTCGCTTCCCTCGTTCACCCAACAACTACCATTTTCTGAATTCACTCTCCTCCACTCACATCAACCGTTTCTCCATCTTCGCCACAACTCCACTAGCCATTGCAAATCCTTCTCCCACCATCCCTACAACGGATGATTCAATAACCAATCCCACTCTCAGAGACTTATGTCAACCTCATGTACCCGATCAATTACTGCAAAGAATGGAAGAGGTTGGATATGTCATGCCTACAGAGGTCCAGAAGCAAGCCTTGTCTCATCTTTTTTCTGGCCGTGACTGCATTCTTCATGCTCAGGCAGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGTCATATGCTGGAAAGACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGCGAGTTCTCTCCGAAAGATTTTGACCTCATATTCATCTTGCAATAACCGTCAGACAGTGTTTGCCAGTGCATCTATACCACATCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAATGCAGTGGAGCCCATGCCATCTCGCCTATATCACAGATTTATAGTATGTGATATGAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTTGCATTATATTTGTTGGCGAGCAGTCTGAGAAGTCGAAAAAGACTGGAAATGCTCCATCCACATCCCTTGTGATTGATTTTCTAAAAACATCATATCATGGTTCTTTAGATATCATCCTTCTTGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGTGGATATCTTCTAGTGGCAACAGATGTAGCTGCTAGAGGAGTTGACATTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATTGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGATGTTAACTGTTCTGTCACAAGCATTATAATCTCTGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTGAAGAGCTTATTCCATAA 1200 0.4225 MNTHTLSLSRLLPLRVLSSQNPNSSSRFPRSPNNYHFLNSLSSTHINRFSIFATTPLAIANPSPTIPTTDDSITNPTLRDLCQPHVPDQLLQRMEEVGYVMPTEVQKQALSHLFSGRDCILHAQAEPPAIVVATVESLCHMLERQLFSLGTLRVLVVDEVDFIFNSSKQASSLRKILTSYSSCNNRQTVFASASIPHHNRFLNEAVQQKWTKRDVIHIHVNAVEPMPSRLYHRFIVCDMKRKLQTLLSLIQSDAPESCIIFVGEQSEKSKKTGNAPSTSLVIDFLKTSYHGSLDIILLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDIPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDVNCSVTSIIISEERFVLQRYENELRFVCEELIP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00268 399 CDD SF2_C_DEAD 232 361 - -
Vivi1g00268 399 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 213 IPR014001 -
Vivi1g00268 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 381 IPR027417 -
Vivi1g00268 399 SMART helicmild6 279 363 IPR001650 -
Vivi1g00268 399 Gene3D - 227 396 IPR027417 -
Vivi1g00268 399 Gene3D - 61 124 IPR027417 -
Vivi1g00268 399 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 73 124 - -
Vivi1g00268 399 Pfam Helicase conserved C-terminal domain 242 361 IPR001650 -
Vivi1g00268 399 Gene3D - 125 211 IPR027417 -
Vivi1g00268 399 Pfam DEAD/DEAH box helicase 128 196 IPR011545 GO:0003676|GO:0005524
Vivi1g00268 399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 399 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00268 Vivi-Chr1 5459504 5470924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00268 130 397 Eukaryotic Initiation Factors Gene Family AT1G72730 25.641 5.90e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00268 - - psat:127138392 508.064