Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00254 ATGGAAGAAGGTAATAGCGACCTTCCTTGTCCATCACCCTCACCCTTTCGATCTTCTTCCCTCCTCAAAGACATTTCAAACTTCAAAACCCCTTTCAAAACCCCTAAACGTTCCTCTTTCTCTCTCAACACCCAATCTCCATCATCTCAATACTTCACCGCTTCCAAATCCAAACAAACCACACTCCTCCGTCGCCCTAACAAATCCTCAGCAGCTGCTTCTAGAAAACTCAAAGCATTCCAACTCGAACAGTCTCACTCTTCACGAAACGCACAGATAAAAAAAGAACAATCGCTCAAATCCCTAGCAAAATCCCTAACCGTTTGGCTCAATTTCCTTCTCGAATCACCTGCTTCTTGCGGTTGCGACCTTTCAGTTGCTGGTGTTCAGATCGGAGATGCTTCTCCGGTGGTGACCAAGGGGAAACGTGATAATGTATCGAGGAATTCGGTTGGAGTTGATTCTTTGTGGAGAACTCCCAAACGACAGAGGAAGAATGCTGCATGTTCGTTGCGAGTTGGTAAGGAAATTGTGAATGCTGCGGATTCACAGAGTTCTTCGTTTTTGAGATTAAAGGATTCTCTGAAGGATGTGTGTAGTTTCGATGATTTCAAGCAGAGAATGAGTATTTATTTGAGTCTTGGAACTTGTGAAGATATCTTCCTGGTCATGAATCAAGTTACCAAGACTATTGATGAAGGAAGGCTAAATATGAAGGCACATTGCCCAATAGTAACAGATTTTGGGTTGAAGGAAAAAGCAGTAAAAGTCCTTATGTGTTATAATCCAAGCTGGTTGCGAATTGGACTATATATAATATTTGGCGGGGACTCTTTAGTGTCTAATGGGGATGGAGAGTCTAATCAAGATGCTGTATTTCTAAAAATGGTCCTTGACAAACTATTTTTTACACATGAGGATTTAGCAAAAGCATATGCTTATAACAAGATGGTTGAAGGAGTTTATAGGTCTGGTTACTATGAGAGTTTGGGGAATGTGATTTTGAAGAGAATATTGTTACTTGTGCTTATCCTTGATAAAGCTAAATGTCAATGTTGCCTTCCTATTGAGTATGGTATTGATGGATTGGATGGTGGTTCACCTTTATTATTCAAGGCAGAGTTTTGGATTAAATCAAGTAGTCAAGTGATTCAGGAATTTCTGTCATCTGATGTAATGCGCGGAGAAGGCAATCTTCTAACACACTTGGTTATTTTAGGTTACAAAGTGTCTCACCAACAGGGGCCTCTTGTTGAATACGATTTCCAGGTCAGAGATTTATTCATAGATCTCCAAGACGGACTAAAACTATGTAGAGCTATTCATCTCTTGCAAAACAATTCTTCTATACTCAAGAAAATTGTAGTTCCTTCTGACACCCGTAAGAAAAATTTGGTAAACTGTGGTGTTGCCCTACAATATCTTAGACTAGCTGGGGTCTCATTACTTGATGAAGACGACACAACAATTGCAACAGAAGATATTATTAACGGGGATAAAGAACTTACAATTTCTTTGCTCTGGAACATGTTTGTTCGTTTGCAGCTGCCTTTGCTGGTTGATAAAACAAGTTTAGTTGGGGAAATTTCTAAAATCCGCGGACTTGGCATGAATCTCGCAAGTGATGCAAATTCTAGTTCTCTGGATTTGCTTTTGAAATGGATTCAGACTGTTTGTGACAATTACAACTGTACAGTTGACAGTTTTCATTCCCTTGTTGATGGCAAAGCAATCTGGTGCTTACTTGATTATTATTTCCAGAAGGAACTGCACAGTGTCTGTTCATTAAAGGAAGTTTATGAAAAAGGTGGCAAGACGTCAATCATGTCAGTTAATGAATATTCAGATGCACTGTACAATTTCATATTATCCCAGAAATTGACCATGTTGCTGGGGAATTTTCCTGAGGTACTTCAGATTAGTGATCTACTTCAGCATAATGGCGCTTGCAGTGATCGAAGTGTGGTGATATTGGTTGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAAAATGGAACACTTAAATTTTCATAAGCTATTGGGTTATGATTGCGAAAACACAAATCGTAGGAATTTGAGGACTGTACAATGCCATTCAAGTTCTGATTCAGCTCAAAAGCCTTATGCTTCAAATGTGCGTGATGATGAAGATGCCGCAAGAAAATTCAAGGCCATCCAAACTTGGTGGCAAGATATGGCTAATCAAAACAATATTATGCAGCCAGCTGTCTCTATTTTGCAGACATCTAGGGCAACCCAAAGCAACATTGATGTTAGAAGAGATTTGTTTTCAGAAGATGCTGCAAGAAAAATACAAGCACATATCAGAGGACTGGTTGTACGGCGCAAGTTTATCAAAATGGTAGATGCTGTTATCCTTTTGCAGACTGTTTTCCGAGCTAGGAAGAAAGTAAGGCTGGAGCCGATTTGCATGATATTCACTGCTGGTCCAATCTGTGATTTCTCATATGAAACATTGAAGCAATCCGAAGTATTTGAGAGGTATGCCACGCTTTTCTATCATAGGCATTATTTTTTGAGGTTGAAAAGGTCAGCACAGCTTATCCAGCAAGCAGTGAGGAGTTGGCTCTATTGGAGGTCTGAACAAGGATGTAGATTAAGTCCTGACCCCATGATTACAGACACAGTGACTGCTGCCACTACTGTTCAGAAATTTGTCCGTGGTTGGATGGCACGATCTAGATATATTTGTGAGCTAGATCAAAAAGAAAAAGATTTAATTTTTTCTGAACAGAAACTTATCTCTGATCTTAAAACAAAGGCAGCTGTTACCATTCAGCTTGCTTGGAAAAACTACATAAGCTGCAAGTCTACAAGGAAAGAGCACTTGTTTGCGACTAAAATTCAATCTAATTTCCGTAGGTGGTTAATGAGAAAACAATTTTTAAATCAGATTCATGCTGTCATAAAAATTCAATCATATTTTCGAATGTGGAAATGTGTGAATGCTATTCAGAACTTCAAAGCCTTGTTTAAGGCGGCTATTGTCATTCAATCTTTTTTTCGTGGATGGATTGCTCGGAAGCATGCTTGTGCTCGTAAGAATCAGATTATTGAGATTCAAAGGCATTGCCGCGGTTGGCTTATGAAACGGGATTTCATGTTTCAAAGAGATGCTATAATAAAAATCCAGAGTGTCATTAGAAGTTTGAACTGCCAGAAGTCACTCAATTGTCAGAAAGATGCTGCATTGGAGATCCAGCGCTCCATCAGGGGGCATTTAACACGAAATTGGCTATTAGGTAGTGCTTCCAAGTCACGTGCAGCTGTTACTGGTAGTTGCATTTCAAGACCTGTTGGCTTACGTAGTTTTCAACTTGAAGCATTCATGTGTGCAGTAGTGAAATTGCAAAGGTGGTGGAAGGGTCTCTTGTTGCTTAAACTAATGAATAGATCAGCCGTCACAATCCAGTCTTGTACACGTGGGTGGATAGCCAGACGAAAGGCCACAGTTGAGAAACACCATACTAATGTCATGGAAGAAAATGCCGCAGTGGAGCTCCAACGCTATATTAGGGGACATTTAACTCGAAATTTGATATTAGGTAGTGCTTCTAAGCTGCGTGCAGTTGCGGCTGGATGCATTTCAAAACCAACTTGCTGTTCTAGTTTTCAGTTGAAACTATTCTTGTTTCAAGTAGTGAAATTGCAACGATGGTGGAAGCATCTCTTCTTACATAAATTGAGGATAAGGTCTGTAATCATTATACAGTCTCAAACTCGTGGGTGGCTAACCAGGCGAAGGGCCAATGTTTATAGACATCATATTATTGTCATACAGTCTCAAATTCGTGGATGGGTAACCAGACGAAGGGCCAACTTTTACCGGCATCATATTATTGTCATACAGTCCCACTGGAAAGGTTACATTGCTCGTAAGCAGTCAACAAAACAGCTAATGGATTTGCGCTTGAGACTGCAAGAGTCTTCCAAAAATGTGGATGATAGCAAACGTCTCATAAATAGACTCTTGGCAGCGCTTTCAAAGCTACTAAATATGAAGAGTCTCAGTGACATCCTTCATACTTGTTCAACATTGAATTTGGCGACAGAGCATTCTCAGAGATGCTGTGAAGAACTTGTGGCTGCTGGGGCCATTGAGACCTTGCTACGGCTTATTGGATCACTCAGCCGGAGTATCCCTGATCAAGAGGTTTTAAAGCATGTTTTATCAACTCTCCGAAATCTTGCTCGCTGTCCCCATCTACTGGAAGTGTTGATACAAACACATGGTTCTATACAAACAATCGTCTTGGAGTTAACAAGGAATAATGAGGAGAGCTTCTTCATTGCTTCTGGGCTTTTGAAGAAAATATGCTCAACTCACCAAGGCGTCAACGCCATAATTAACTCCCCTGCCTTACTAAGGAGACTGCGCAGTCTTGTTGAGAAGCTTGCTAGGAAGGTCACTTATAACCCAAAAAGTAATGTTCGGGGTCCTACTCCTAGTCCAGTTGTTACTGCTAAAGAAAACCCAGATAGAAGATTGAAGGAGGCTACTGAAATTCTAAAGCTTCTAACACACGGTTGA 4554 0.4029 MEEGNSDLPCPSPSPFRSSSLLKDISNFKTPFKTPKRSSFSLNTQSPSSQYFTASKSKQTTLLRRPNKSSAAASRKLKAFQLEQSHSSRNAQIKKEQSLKSLAKSLTVWLNFLLESPASCGCDLSVAGVQIGDASPVVTKGKRDNVSRNSVGVDSLWRTPKRQRKNAACSLRVGKEIVNAADSQSSSFLRLKDSLKDVCSFDDFKQRMSIYLSLGTCEDIFLVMNQVTKTIDEGRLNMKAHCPIVTDFGLKEKAVKVLMCYNPSWLRIGLYIIFGGDSLVSNGDGESNQDAVFLKMVLDKLFFTHEDLAKAYAYNKMVEGVYRSGYYESLGNVILKRILLLVLILDKAKCQCCLPIEYGIDGLDGGSPLLFKAEFWIKSSSQVIQEFLSSDVMRGEGNLLTHLVILGYKVSHQQGPLVEYDFQVRDLFIDLQDGLKLCRAIHLLQNNSSILKKIVVPSDTRKKNLVNCGVALQYLRLAGVSLLDEDDTTIATEDIINGDKELTISLLWNMFVRLQLPLLVDKTSLVGEISKIRGLGMNLASDANSSSLDLLLKWIQTVCDNYNCTVDSFHSLVDGKAIWCLLDYYFQKELHSVCSLKEVYEKGGKTSIMSVNEYSDALYNFILSQKLTMLLGNFPEVLQISDLLQHNGACSDRSVVILVVFLASQLFVKKKMEHLNFHKLLGYDCENTNRRNLRTVQCHSSSDSAQKPYASNVRDDEDAARKFKAIQTWWQDMANQNNIMQPAVSILQTSRATQSNIDVRRDLFSEDAARKIQAHIRGLVVRRKFIKMVDAVILLQTVFRARKKVRLEPICMIFTAGPICDFSYETLKQSEVFERYATLFYHRHYFLRLKRSAQLIQQAVRSWLYWRSEQGCRLSPDPMITDTVTAATTVQKFVRGWMARSRYICELDQKEKDLIFSEQKLISDLKTKAAVTIQLAWKNYISCKSTRKEHLFATKIQSNFRRWLMRKQFLNQIHAVIKIQSYFRMWKCVNAIQNFKALFKAAIVIQSFFRGWIARKHACARKNQIIEIQRHCRGWLMKRDFMFQRDAIIKIQSVIRSLNCQKSLNCQKDAALEIQRSIRGHLTRNWLLGSASKSRAAVTGSCISRPVGLRSFQLEAFMCAVVKLQRWWKGLLLLKLMNRSAVTIQSCTRGWIARRKATVEKHHTNVMEENAAVELQRYIRGHLTRNLILGSASKLRAVAAGCISKPTCCSSFQLKLFLFQVVKLQRWWKHLFLHKLRIRSVIIIQSQTRGWLTRRRANVYRHHIIVIQSQIRGWVTRRRANFYRHHIIVIQSHWKGYIARKQSTKQLMDLRLRLQESSKNVDDSKRLINRLLAALSKLLNMKSLSDILHTCSTLNLATEHSQRCCEELVAAGAIETLLRLIGSLSRSIPDQEVLKHVLSTLRNLARCPHLLEVLIQTHGSIQTIVLELTRNNEESFFIASGLLKKICSTHQGVNAIINSPALLRRLRSLVEKLARKVTYNPKSNVRGPTPSPVVTAKENPDRRLKEATEILKLLTHG 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00254 1517 Gene3D - 410 515 IPR036872 -
Vivi1g00254 1517 SMART iq_5 971 993 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1020 1042 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 787 806 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1066 1088 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1236 1258 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 766 786 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1136 1158 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 948 970 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1283 1304 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 997 1019 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1167 1189 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 1259 1281 IPR000048 GO:0005515
Vivi1g00254 1517 SMART iq_5 882 904 IPR000048 GO:0005515
Vivi1g00254 1517 MobiDBLite consensus disorder prediction 29 55 - -
Vivi1g00254 1517 SUPERFAMILY ARM repeat 1329 1472 IPR016024 -
Vivi1g00254 1517 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 765 792 IPR000048 GO:0005515
Vivi1g00254 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 998 IPR027417 -
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1168 1197 IPR000048 GO:0005515
Vivi1g00254 1517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1372 1419 IPR000225 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 885 912 IPR000048 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1283 1311 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1170 1186 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 767 785 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1263 1279 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1069 1086 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1025 1041 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 886 903 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1000 1017 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1139 1156 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 953 969 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 974 988 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1286 1302 IPR000048 GO:0005515
Vivi1g00254 1517 Pfam IQ calmodulin-binding motif 1239 1256 IPR000048 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1021 1050 IPR000048 GO:0005515
Vivi1g00254 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 721 809 IPR027417 -
Vivi1g00254 1517 Pfam Armadillo/beta-catenin-like repeat 1362 1406 IPR000225 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1260 1287 IPR000048 GO:0005515
Vivi1g00254 1517 SMART arm_5 1361 1406 IPR000225 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1137 1165 IPR000048 GO:0005515
Vivi1g00254 1517 Gene3D - 998 1044 - -
Vivi1g00254 1517 Gene3D - 1260 1308 - -
Vivi1g00254 1517 Gene3D - 765 808 - -
Vivi1g00254 1517 Gene3D - 884 950 - -
Vivi1g00254 1517 Gene3D - 1045 1099 - -
Vivi1g00254 1517 Gene3D - 1135 1200 - -
Vivi1g00254 1517 Gene3D - 951 997 - -
Vivi1g00254 1517 SUPERFAMILY Calponin-homology domain, CH-domain 340 588 IPR036872 -
Vivi1g00254 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1045 IPR027417 -
Vivi1g00254 1517 Coils Coil 1300 1320 - -
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1067 1096 IPR000048 GO:0005515
Vivi1g00254 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1307 IPR027417 -
Vivi1g00254 1517 CDD CH_ASPM_rpt1 399 510 - -
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1237 1264 IPR000048 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 1000 1027 IPR000048 GO:0005515
Vivi1g00254 1517 ProSiteProfiles IQ motif profile. 949 978 IPR000048 GO:0005515
Vivi1g00254 1517 Gene3D - 542 667 IPR036872 -
Vivi1g00254 1517 PANTHER UNCHARACTERIZED 884 1039 - -
Vivi1g00254 1517 Gene3D - 1309 1491 IPR011989 -
Vivi1g00254 1517 ProSiteProfiles Calponin homology (CH) domain profile. 393 515 IPR001715 GO:0005515
Vivi1g00254 1517 Pfam Calponin homology (CH) domain 423 512 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00254 Vivi-Chr1 5183713 5194282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00254 912 1073 Myosins gene family AT1G04160 28.902 1.03e-06 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00254 K16743 - gmx:100817636 1542.71