Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00253 ATGGAAGAAGGTAATAGCGACCTTCCTTGTCCATCACCCTCACCCTTTCGATCTTCTTCCCTCCTCAAAGACATTTCAAACTTCAAAACCCCTTTCAAAACCCCTAAACGTTCCTCTTTCTCTCTCAACACCCAATCTCCATCATCTCAATACTTCACCGCTTCCAAATCCAAACAAACCACACTCCTCCGTCGCCCTAACAAATCCTCAGCAGCTGCTTCTAGAAAACTCAAAGCATTCCAACTCGAACAGTCTCACTCTTCACGAAACGCACAGATAAAAAAAGAACAATCGCTCAAATCCCTAGCAAAATCCCTAACCGTTTGGCTCAATTTCCTTCTCGAATCACCTGCTTCTTGCGGTTGCGACCTTTCAGTTGCTGGTGTTCAGATCGGAGATGCTTCTCCGGTGGTGACCAAGGGGAAACGTGATAATGTATCGAGGAATTCGGTTGGAGTTGATTCTTTGTGGAGAACTCCCAAACGACAGAGGAAGAATGCTGCATGTTCGTTGCGAGTTGGTAAGGAAATTGTGAATGCTGCGGATTCACAGAGTTCTTCGTTTTTGAGATTAAAGGATTCTCTGAAGGATGTGTGTAGTTTCGATGATTTCAAGCAGAGAATGAGTATTTATTTGAGTCTTGGAACTTGTGAAGATATCTTCCTGGTCATGAATCAAGTTACCAAGACTATTGATGAAGGAAGGCTAAATATGAAGGCACATTGCCCAATAGTAACAGATTTTGGGTTGAAGGAAAAAGCAGTAAAAGTCCTTATGTGTTATAATCCAAGCTGGTTGCGAATTGGACTATATATAATATTTGGCGGGGACTCTTTAGTGTCTAATGGGGATGGAGAGTCTAATCAAGATGCTGTATTTCTAAAAATGGTCCTTGACAAACTATTTTTTACACATGAGGATTTAGCAAAAGCATATGCTTATAACAAGATGGTTGAAGGAGTTTATAGGTCTGGTTACTATGAGAGTTTGGGGAATGTGATTTTGAAGAGAATATTGTTACTTGTGCTTATCCTTGATAAAGCTAAATGTCAATGTTGCCTTCCTATTGAGTATGGTATTGATGGATTGGATGGTGGTTCACCTTTATTATTCAAGGCAGAGTTTTGGATTAAATCAAGTAGTCAAGTGATTCAGGAATTTCTGTCATCTGATGTAATGCGCGGAGAAGGCAATCTTCTAACACACTTGGTTATTTTAGGTTACAAAGTGTCTCACCAACAGGGGCCTCTTGTTGAATACGATTTCCAGGTCAGAGATTTATTCATAGATCTCCAAGACGGACTAAAACTATGTAGAGCTATTCATCTCTTGCAAAACAATTCTTCTATACTCAAGAAAATTGTAGTTCCTTCTGACACCCGTAAGAAAAATTTGGTAAACTGTGGTGTTGCCCTACAATATCTTAGACTAGCTGGGGTCTCATTACTTGATGAAGACGACACAACAATTGCAACAGAAGATATTATTAACGGGGATAAAGAACTTACAATTTCTTTGCTCTGGAACATGTTTGTTCGTTTGCAGCTGCCTTTGCTGGTTGATAAAACAAGTTTAGTTGGGGAAATTTCTAAAATCCGCGGACTTGGCATGAATCTCGCAAGTGATGCAAATTCTAGTTCTCTGGATTTGCTTTTGAAATGGATTCAGACTGTTTGTGACAATTACAACTGTACAGTTGACAGTTTTCATTCCCTTGTTGATGGCAAAGCAATCTGGTGCTTACTTGATTATTATTTCCAGAAGGAACTGCACAGTGTCTGTTCATTAAAGGAAGTTTATGAAAAAGGTGGCAAGACGTCAATCATGTCAGTTAATGAATATTCAGATGCACTGTACAATTTCATATTATCCCAGAAATTGACCATGTTGCTGGGGAATTTTCCTGAGGTACTTCAGATTAGTGATCTACTTCAGCATAATGGCGCTTGCAGTGATCGAAGTGTGGTGATATTGGTTGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAAAATGGAACACTTAAATTTTCATAAGCTATTGGGTTATGATTGCGAAAACACAAATCGTAGGAATTTGAGGACTGTACAATGCCATTCAAGTTCTGATTCAGCTCAAAAGCCTTATGCTTCAAATGTGCGTGATGATGAAGATGCCGCAAGAAAATTCAAGGCCATCCAAACTTGGTGGCAAGATATGGCTAATCAAAACAATATTATGCAGCCAGCTGTCTCTATTTTGCAGACATCTAGGGCAACCCAAAGCAACATTGATGTTAGAAGAGATGCTGCAAGAAAAATACAAGCACATATCAGAGGACTGGTTGTACGGCGCAAGTTTATCAAAATGGTAGATGCTGTTATCCTTTTGCAGACTGTTTTCCGAGCTAGGAAGAAAGTAAGGCTGGAGCCGATTTGCATGATATTCACTGCTGGTCCAATCTGTGATTTCTCATATGAAACATTGAAGCAATCCGAAGTATTTGAGAGGTATGCCACGCTTTTCTATCATAGGCATTATTTTTTGAGGTTGAAAAGGTCAGCACAGCTTATCCAGCAAGCAGTGAGGAGTTGGCTCTATTGGAGGTCTGAACAAGGATGTAGATTAAGTCCTGACCCCATGATTACAGACACAGTGACTGCTGCCACTACTGTTCAGAAATTTGTCCGTGGTTGGATGGCACGATCTAGATATATTTGTGAGCTAGATCAAAAAGAAAAAGATTTAATTTTTTCTGAACAGAAACTTATCTCTGATCTTAAAACAAAGGCAGCTGTTACCATTCAGCTTGCTTGGAAAAACTACATAAGCTGCAAGTCTACAAGGAAAGAGCACTTGTTTGCGACTAAAATTCAATCTAATTTCCGTAGGTGGTTAATGAGAAAACAATTTTTAAATCAGATTCATGCTGTCATAAAAATTCAATCATATTTTCGAATGTGGAAATGTGTGAATGCTATTCAGAACTTCAAAGCCTTGTTTAAGGCGGCTATTGTCATTCAATCTTTTTTTCGTGGATGGATTGCTCGGAAGCATGCTTGTGCTCGTAAGAATCAGATTATTGAGATTCAAAGGCATTGCCGCGGTTGGCTTATGAAACGGGATTTCATGTTTCAAAGAGATGCTATAATAAAAATCCAGAGTGTCATTAGAAGTTTGAACTGCCAGAAGTCACTCAATTGTCAGAAAGATGCTGCATTGGAGATCCAGCGCTCCATCAGGGGGCATTTAACACGAAATTGGCTATTAGGTAGTGCTTCCAAGTCACGTGCAGCTGTTACTGGTAGTTGCATTTCAAGACCTGTTGGCTTACGTAGTTTTCAACTTGAAGCATTCATGTGTGCAGTAGTGAAATTGCAAAGGTGGTGGAAGGGTCTCTTGTTGCTTAAACTAATGAATAGATCAGCCGTCACAATCCAGTCTTGTACACGTGGGTGGATAGCCAGACGAAAGGCCACAGTTGAGAAACACCATACTAATGTCATGGAAGAAAATGCCGCAGTGGAGCTCCAACGCTATATTAGGGGACATTTAACTCGAAATTTGATATTAGGTAGTGCTTCTAAGCTGCGTGCAGTTGCGGCTGGATGCATTTCAAAACCAACTTGCTGTTCTAGTTTTCAGTTGAAACTATTCTTGTTTCAAGTAGTGAAATTGCAACGATGGTGGAAGCATCTCTTCTTACATAAATTGAGGATAAGGTCTGTAATCATTATACAGTCTCAAACTCGTGGGTGGCTAACCAGGCGAAGGGCCAATGTTTATAGACATCATATTATTGTCATACAGTCTCAAATTCGTGGATGGGTAACCAGACGAAGGGCCAACTTTTACCGGCATCATATTATTGTCATACAGTCCCACTGGAAAGGTTACATTGCTCGTAAGCAGTCAACAAAACAGCTAATGGATTTGCGCTTGAGACTGCAAGAGTCTTCCAAAAATGTGGATGATAGCAAACGTCTCATAAATAGACTCTTGGCAGCGCTTTCAAAGCTACTAAATATGAAGAGTCTCAGTGACATCCTTCATACTTGTTCAACATTGAATTTGGCGACAGAGCATTCTCAGAGATGCTGTGAAGAACTTGTGGCTGCTGGGGCCATTGAGACCTTGCTACGGCTTATTGGATCACTCAGCCGGAGTATCCCTGATCAAGAGGTTTTAAAGCATGTTTTATCAACTCTCCGAAATCTTGCTCGCTGTCCCCATCTACTGGAAGTGTTGATACAAACACATGGTTCTATACAAACAATCGTCTTGGAGTTAACAAGGAATAATGAGGAGAGCTTCTTCATTGCTTCTGGGCTTTTGAAGAAAATATGCTCAACTCACCAAGGCGTCAACGCCATAATTAACTCCCCTGCCTTACTAAGGAGACTGCGCAGTCTTGTTGAGAAGCTTGCTAGGAAGGTCACTTATAACCCAAAAAGTAATGTTCGGGGTCCTACTCCTAGTCCAGTTGTTACTGCTAAAGAAAACCCAGATAGAAGATTGAAGGAGGCTACTGAAATTCTAAAGCTTCTAACACACGGTTGA 4539 0.4034 MEEGNSDLPCPSPSPFRSSSLLKDISNFKTPFKTPKRSSFSLNTQSPSSQYFTASKSKQTTLLRRPNKSSAAASRKLKAFQLEQSHSSRNAQIKKEQSLKSLAKSLTVWLNFLLESPASCGCDLSVAGVQIGDASPVVTKGKRDNVSRNSVGVDSLWRTPKRQRKNAACSLRVGKEIVNAADSQSSSFLRLKDSLKDVCSFDDFKQRMSIYLSLGTCEDIFLVMNQVTKTIDEGRLNMKAHCPIVTDFGLKEKAVKVLMCYNPSWLRIGLYIIFGGDSLVSNGDGESNQDAVFLKMVLDKLFFTHEDLAKAYAYNKMVEGVYRSGYYESLGNVILKRILLLVLILDKAKCQCCLPIEYGIDGLDGGSPLLFKAEFWIKSSSQVIQEFLSSDVMRGEGNLLTHLVILGYKVSHQQGPLVEYDFQVRDLFIDLQDGLKLCRAIHLLQNNSSILKKIVVPSDTRKKNLVNCGVALQYLRLAGVSLLDEDDTTIATEDIINGDKELTISLLWNMFVRLQLPLLVDKTSLVGEISKIRGLGMNLASDANSSSLDLLLKWIQTVCDNYNCTVDSFHSLVDGKAIWCLLDYYFQKELHSVCSLKEVYEKGGKTSIMSVNEYSDALYNFILSQKLTMLLGNFPEVLQISDLLQHNGACSDRSVVILVVFLASQLFVKKKMEHLNFHKLLGYDCENTNRRNLRTVQCHSSSDSAQKPYASNVRDDEDAARKFKAIQTWWQDMANQNNIMQPAVSILQTSRATQSNIDVRRDAARKIQAHIRGLVVRRKFIKMVDAVILLQTVFRARKKVRLEPICMIFTAGPICDFSYETLKQSEVFERYATLFYHRHYFLRLKRSAQLIQQAVRSWLYWRSEQGCRLSPDPMITDTVTAATTVQKFVRGWMARSRYICELDQKEKDLIFSEQKLISDLKTKAAVTIQLAWKNYISCKSTRKEHLFATKIQSNFRRWLMRKQFLNQIHAVIKIQSYFRMWKCVNAIQNFKALFKAAIVIQSFFRGWIARKHACARKNQIIEIQRHCRGWLMKRDFMFQRDAIIKIQSVIRSLNCQKSLNCQKDAALEIQRSIRGHLTRNWLLGSASKSRAAVTGSCISRPVGLRSFQLEAFMCAVVKLQRWWKGLLLLKLMNRSAVTIQSCTRGWIARRKATVEKHHTNVMEENAAVELQRYIRGHLTRNLILGSASKLRAVAAGCISKPTCCSSFQLKLFLFQVVKLQRWWKHLFLHKLRIRSVIIIQSQTRGWLTRRRANVYRHHIIVIQSQIRGWVTRRRANFYRHHIIVIQSHWKGYIARKQSTKQLMDLRLRLQESSKNVDDSKRLINRLLAALSKLLNMKSLSDILHTCSTLNLATEHSQRCCEELVAAGAIETLLRLIGSLSRSIPDQEVLKHVLSTLRNLARCPHLLEVLIQTHGSIQTIVLELTRNNEESFFIASGLLKKICSTHQGVNAIINSPALLRRLRSLVEKLARKVTYNPKSNVRGPTPSPVVTAKENPDRRLKEATEILKLLTHG 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00253 1512 MobiDBLite consensus disorder prediction 29 55 - -
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 944 973 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 880 907 IPR000048 GO:0005515
Vivi1g00253 1512 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g00253 1512 SMART iq_5 943 965 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1278 1299 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 877 899 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1231 1253 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1015 1037 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1061 1083 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1162 1184 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 992 1014 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 759 781 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1131 1153 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 782 801 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 966 988 IPR000048 GO:0005515
Vivi1g00253 1512 SMART iq_5 1254 1276 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1278 1306 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 760 787 IPR000048 GO:0005515
Vivi1g00253 1512 PANTHER UNCHARACTERIZED 880 1034 - -
Vivi1g00253 1512 Gene3D - 946 992 - -
Vivi1g00253 1512 Gene3D - 758 803 - -
Vivi1g00253 1512 Gene3D - 879 945 - -
Vivi1g00253 1512 Gene3D - 1255 1303 - -
Vivi1g00253 1512 Gene3D - 1130 1195 - -
Vivi1g00253 1512 Gene3D - 993 1039 - -
Vivi1g00253 1512 Gene3D - 1040 1094 - -
Vivi1g00253 1512 SUPERFAMILY ARM repeat 1324 1467 IPR016024 -
Vivi1g00253 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1046 IPR027417 -
Vivi1g00253 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 993 IPR027417 -
Vivi1g00253 1512 Pfam Armadillo/beta-catenin-like repeat 1357 1401 IPR000225 GO:0005515
Vivi1g00253 1512 Coils Coil 1295 1315 - -
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1232 1259 IPR000048 GO:0005515
Vivi1g00253 1512 Gene3D - 410 515 IPR036872 -
Vivi1g00253 1512 Gene3D - 1304 1486 IPR011989 -
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 948 964 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1165 1181 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1020 1036 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1234 1251 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 969 983 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1134 1151 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1281 1297 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 995 1012 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 761 780 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 881 898 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1258 1274 IPR000048 GO:0005515
Vivi1g00253 1512 Pfam IQ calmodulin-binding motif 1064 1081 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 995 1022 IPR000048 GO:0005515
Vivi1g00253 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1302 IPR027417 -
Vivi1g00253 1512 CDD CH_ASPM_rpt1 399 510 - -
Vivi1g00253 1512 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1367 1414 IPR000225 GO:0005515
Vivi1g00253 1512 SUPERFAMILY Calponin-homology domain, CH-domain 340 588 IPR036872 -
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1132 1160 IPR000048 GO:0005515
Vivi1g00253 1512 Gene3D - 542 667 IPR036872 -
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1163 1192 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1062 1091 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles Calponin homology (CH) domain profile. 393 515 IPR001715 GO:0005515
Vivi1g00253 1512 Pfam Calponin homology (CH) domain 423 512 IPR001715 GO:0005515
Vivi1g00253 1512 SMART arm_5 1356 1401 IPR000225 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1016 1045 IPR000048 GO:0005515
Vivi1g00253 1512 ProSiteProfiles IQ motif profile. 1255 1282 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00253 Vivi-Chr1 5183713 5194282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00253 907 1068 Myosins gene family AT1G04160 28.902 1.16e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00253 K16743 - gmx:100817636 1542.32