Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00252 ATGATGCAACCCGGCGGCCCTGGCATGGCTCCACCCACCATCCCCCAACAACACCAACAATACCAACAGCAACACCAACAACAACCCTACATGATGATGCCTCCACAGCATCAGCCTCAAACCCAGCCTCCTCAGATGTGGGGCCCCTCTCCTCAGGCTCCTCCTCAATCTGCGCCGCCTCAACAACAGGCTCAGCCGGCTAGCGCTGATGAGGTTCGGACTCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAGAATTATCTCTACCAATGTTTCTCACACACCGGCGAGGTTGGATCTGTTAAAGTTATTCGCAATAAGCAGACTAATCAATCCGAAGGCTATGGATTTCTTGAGTTTACTAGCCGTTCTGGTGCTGAGAGAGTACTTCAATCCTTTAATGGCACCATTATGCCAAATGGTGGGCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCCGGTGAGAAGCGTCACGATGATTCTCCTGATCATACCATATTTGTTGGAGACTTGGCTGCTGATGTTACTGATTATCATCTGACGGAAGTATTTAGAACTCGGTATAACTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCAGGACAAAAGGTTATGGTTTTGTCAGGTTTGCAGATGAGAGTGAACAGATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCGACAAGACCCATGCGTATTGGACCAGCTTCTAACAAAAACGTTAACACACAGACGTCAAAAGCTTCATCATATCAGAGTCCCCAAGGAGGAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGATCATTTGAAACAAGTCTTTGGGCAATATGGAGAACTTGTTCATGTGAAGATTCCGTCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTCTGCAGAGGAGGCACTGCGAGTTTTAAATGGGACCCTTCTAGGTGGACAAAATGTTCGACTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGAAGCAGTGGATACTTTGGATATCCCCAGGGTTATGAAAATTATGGTTATGCCCCTGCTGCCGGACAGGACCCCAATATGTATGGCAGTTACCCTGCAGGGTATGCTAACTACCAACCTCCTCAGCAGCAACAACAATTAGGATATAGCTAA 1236 0.4684 MMQPGGPGMAPPTIPQQHQQYQQQHQQQPYMMMPPQHQPQTQPPQMWGPSPQAPPQSAPPQQQAQPASADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFTSRSGAERVLQSFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDHTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNVNTQTSKASSYQSPQGGGAQNENDPNNTTIFVGNLDPNVTDDHLKQVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYGYAPAAGQDPNMYGSYPAGYANYQPPQQQQQLGYS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00252 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 351 - -
Vivi1g00252 411 FunFam Polyadenylate-binding protein RBP45 7 157 - -
Vivi1g00252 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 245 IPR000504 GO:0003723
Vivi1g00252 411 SUPERFAMILY RNA-binding domain, RBD 161 264 IPR035979 GO:0003676
Vivi1g00252 411 FunFam Polyadenylate-binding protein RBP45C 250 357 - -
Vivi1g00252 411 Gene3D - 153 254 IPR012677 -
Vivi1g00252 411 SUPERFAMILY RNA-binding domain, RBD 33 154 IPR035979 GO:0003676
Vivi1g00252 411 Gene3D - 72 152 IPR012677 -
Vivi1g00252 411 SMART rrm1_1 276 343 IPR000504 GO:0003723
Vivi1g00252 411 SMART rrm1_1 74 149 IPR000504 GO:0003723
Vivi1g00252 411 SMART rrm1_1 167 241 IPR000504 GO:0003723
Vivi1g00252 411 SUPERFAMILY RNA-binding domain, RBD 265 373 IPR035979 GO:0003676
Vivi1g00252 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 347 IPR000504 GO:0003723
Vivi1g00252 411 MobiDBLite consensus disorder prediction 36 61 - -
Vivi1g00252 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 153 IPR000504 GO:0003723
Vivi1g00252 411 MobiDBLite consensus disorder prediction 237 276 - -
Vivi1g00252 411 FunFam Polyadenylate-binding protein RBP45C 158 249 - -
Vivi1g00252 411 Gene3D - 255 356 IPR012677 -
Vivi1g00252 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 340 IPR000504 GO:0003723
Vivi1g00252 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 231 IPR000504 GO:0003723
Vivi1g00252 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 140 IPR000504 GO:0003723
Vivi1g00252 411 CDD RRM1_SECp43_like 74 154 - -
Vivi1g00252 411 CDD RRM2_SECp43_like 165 244 - -
Vivi1g00252 411 MobiDBLite consensus disorder prediction 1 70 - -
Vivi1g00252 411 MobiDBLite consensus disorder prediction 397 411 - -
Vivi1g00252 411 MobiDBLite consensus disorder prediction 240 276 - -
Vivi1g00252 411 MobiDBLite consensus disorder prediction 13 35 - -
Vivi1g00252 411 MobiDBLite consensus disorder prediction 390 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00252 Vivi-Chr1 5166822 5171418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00252 167 340 Eukaryotic Initiation Factors Gene Family AT4G34110 31.285 6.41e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00252 - - gmx:100796848 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00252 1 5166822 5171418 Vivi1g00252 1 5166822 5171418 ECH
Vivi1g00252 1 5166822 5171418 Vivi1g00252 1 5166822 5171418 PCT