Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00251 ATGGATGGTGGTGACGTTATTGGCCATGGAGTAATGCAAGTTAACTCTGAAGCACACGATGGGATTTTTCATGAGAATGGTCGTGTTAACGATGACGGTGAACTGGATTTTGTTAGTGATGGATGCTTGGATAATGTTGAATATGACAACAGAGTTGTTGATGAAGATTCTGAGTTTGAAGAAGTTGAATACTATGATGAAGATGCGGAAGAAGATAATGAATTTTACGGATGTGAATACGATGATGAAGATGGAGATGATGATGGCGAATTAGATGGTGATGATTATGATGACGAGATAGGTTCCGGTTATGTTAGTGGACACGAATATTGGAATACAGATTCAAACGGCGGTGGAATTTCTGGGGAAGGATCGGAATGGGGTTCAGACAGATTGAATGAATCGATATCTTCAGATCAACTTCCAGACGAATCATTTGTTGTTGACGAGTTTGACGACATTGCAAATATGGACATGTTTAACTTGCAATGTGATAATGTTTCGAAGCTGCAATTTGGAAGTCTGGAAATAGCTTACACATGGTACTGTTGGTTTGCAAAGATGAACGGTTTTGCAGTCCGTAAAGGTCAAGTTATTAAAAAAAAGAGTGGAGATGTTACTCAACAAACATTTCTTTGTAACCTTGCAGAATTTAGGCAAAACAAAGTAGATAATCGCAAACGTGGTCCGAGGCACGAAACCCGGTGTGGATGTGAAGCAAAATTTCGGGTTCATATTGATATAATTTCACACCGTTGGTATGTCACAGTTTTTACCTTTGAGCACAATCATGGAATGTTAAAGGAGAAGCACTGCAGGCTGTTGGCAGGTAATAGGAAGCTTAGTAAGTCAGATAAGATGCAAATTAAGAATTTTGGGAATGCCGGAATCAAAGTAACTCAAATGATTGGTTCATTCGCTAATGCTGCCGGGGGGTATGATAAGGTAGGATTTTTGAAGAAGGATGTACATAATCAAATTGCAAGACAAAGGAAAGAGATGTCTTCTGATGCTAAAGGTGTTGTCAGGTATCTTATTGATCTTCGTGTAATAGATCCATTGATGCTTGTTGCACACACGGTGGGTGCGGATGGAACGTTGCAAAACCTATTTTGGAGCGACGGTGAGAGTCAAAAGAATTATGAACTGTTTGGTGATGTGCTTGCTTTTGATGCTACCTACAAGAAAAATAAGTACAGGTGCCCATTTGTTGTTTTTTCTGGTGTTAATCACCATAACCAGACGATTATATTTGCTACTGCCATAGTTTCAAATGAGGTTGAAGGGACATATGTATGGTTGCTGGAGCAGTTTTTGGTTGCAATGAAAGGTAAGACACCTTTATCTGTAATAACGGACGGTGATGTTGCTATGAGAAATGCAATCAGGAAAGTCTTTCCCAACAGTTACCACAGGTTATGTGCATGGCATCTCCTACGAAATGCAATTTCCAACATTAGCAATCCCAATTTCATCCCTGTTTTCAAAAAATTAATGCTTGGTGATCACGATGTTTGGAAATTTGAGAGTCTGTGGAATGAAATGTTAGATAGGTTTGGGTTAGAAGATAATAATTGGATCAATGAATTGTACCAGAAAAGGAAGATGTGGGCAACAGCTCATATTAGGGGAAATTTCTTTGCAGGAATAAGAACGACATCGCGGTGCGAAGCATTTCATAGTCATATGGGACAGTTTGTACACTCGAGGATGAATATGACTGATTTTGTTAAGCAGTTCCATAGGTGTGTGGCATATTTTCGATTTAGAGAGGTTCAAGCTGATTTTGAATCCCAATATGGACAGGCAGTGTTGCATACCAATCTTAGGGCGCTTGAGAGGTCAGCATCAAAGCACTGGACAAAAGAGATATTTGAAATGGTACGATCTGTTATGAAAAAGGTAACCTTAACATCTGTATTAGATATTCAAGATATGGCATCAGTTACCATTTATGCGGTGACAAAATACAGAGACGAAGGGCATGGATGGCGTGTTTCCCACTGTCCATCGAATAACGATTTCAGATGCTCGTGTCTTAGAATGGAATCCATTGGGATTCCTTGTGAGCACATTGTTGCTGTGATGGTTTATCTTAATATTGTAGAATTTCCTGAGAATCTTGTGCTGAATCGTTGGTCATTATATGCGAAGGAGTCTATTAGTGGAAGTTATGAAGATGGTTCCCACTACTGGGATTCACATTTGGTTGCTAGACACGCTACTTTGGTGAATCTTAGTAAGGAGGTCGCTGACTTGTCATATATGGATGTTGATGATTACAAAAAATATTTAGAATATCTGACTAATGAACTTTGTAGGCTTAAATCGAAGTACAACAATGAAGATGTTCCAGATAACATACATGTTGAAGAGGAGTTGGTGAATATACTTAACCCTTCATGTTCAAGAAGCAAGGGTTGTGGACCAGGTACTGTTGGTACATCAGAGAGACCCAGGCGGACACAGACGTGTGGGATATGCGGTGCAGCTGGTCACAACAGAAGATGCTGCCCTACTCTTGGAGCAGATGGAGAGCCTCCTGCAGATAGTTCTTTACAATCAACATCTGTAAGGTTAAGTAATGACTATGGATTTTCAGTTTGA 2607 0.397 MDGGDVIGHGVMQVNSEAHDGIFHENGRVNDDGELDFVSDGCLDNVEYDNRVVDEDSEFEEVEYYDEDAEEDNEFYGCEYDDEDGDDDGELDGDDYDDEIGSGYVSGHEYWNTDSNGGGISGEGSEWGSDRLNESISSDQLPDESFVVDEFDDIANMDMFNLQCDNVSKLQFGSLEIAYTWYCWFAKMNGFAVRKGQVIKKKSGDVTQQTFLCNLAEFRQNKVDNRKRGPRHETRCGCEAKFRVHIDIISHRWYVTVFTFEHNHGMLKEKHCRLLAGNRKLSKSDKMQIKNFGNAGIKVTQMIGSFANAAGGYDKVGFLKKDVHNQIARQRKEMSSDAKGVVRYLIDLRVIDPLMLVAHTVGADGTLQNLFWSDGESQKNYELFGDVLAFDATYKKNKYRCPFVVFSGVNHHNQTIIFATAIVSNEVEGTYVWLLEQFLVAMKGKTPLSVITDGDVAMRNAIRKVFPNSYHRLCAWHLLRNAISNISNPNFIPVFKKLMLGDHDVWKFESLWNEMLDRFGLEDNNWINELYQKRKMWATAHIRGNFFAGIRTTSRCEAFHSHMGQFVHSRMNMTDFVKQFHRCVAYFRFREVQADFESQYGQAVLHTNLRALERSASKHWTKEIFEMVRSVMKKVTLTSVLDIQDMASVTIYAVTKYRDEGHGWRVSHCPSNNDFRCSCLRMESIGIPCEHIVAVMVYLNIVEFPENLVLNRWSLYAKESISGSYEDGSHYWDSHLVARHATLVNLSKEVADLSYMDVDDYKKYLEYLTNELCRLKSKYNNEDVPDNIHVEEELVNILNPSCSRSKGCGPGTVGTSERPRRTQTCGICGAAGHNRRCCPTLGADGEPPADSSLQSTSVRLSNDYGFSV 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00251 868 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 756 IPR031052 GO:0006355
Vivi1g00251 868 Pfam MULE transposase domain 387 481 IPR018289 -
Vivi1g00251 868 ProSiteProfiles Zinc finger SWIM-type profile. 652 700 IPR007527 GO:0008270
Vivi1g00251 868 SMART 26again6 675 702 IPR006564 GO:0008270
Vivi1g00251 868 Pfam FAR1 DNA-binding domain 181 266 IPR004330 -
Vivi1g00251 868 Pfam SWIM zinc finger 676 699 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00251 Vivi-Chr1 5160508 5163207 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g00251 MULE 3.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00251 - - vvo:131598033 1236.86