Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00234 ATGGCTGACATTGACTGGCCAAAGAAGGATAACCGTCGATTGCTTCATGTTGTTTACCGTGTTGGTGACCTTGATCGCGCCATCAAGTTTTACACTCAAGCTCTGGGAATGAAGCTTTTGAGACAAAGAGATATTCCTGAGGAGAAATATGCTAACGCTTTTGTTGGATTTGGCGATGAAACATCACATTTTGCTATTGAATTAACTTACAATTATGGAGTGACTTCTTATGATGTTGGAGATGGCTTTGGACATTTTGGAATTGCAACTCAAGATGTTTACAAATTGGTTGAGCACATTCGGGCTTTTGGTGGAAACATCACTAGGGAGGCTGGTCCAGTTCAGGGCGGAACAACTGTTATCGCCTTTGTGAAGGATCCCGATGGCTACACTTTTGCACTCATCCAAAGATCTGTATTTGTTGATCCTTTTGTTCAAATCTCGCTCCGCGTTGGTGATTTAGAACGCGACATTAAGTTTTATGAAAAGGCTTTGGGCTTGAAGGTGCTGAGGAAGAACGATAATCCTGAGAGTAAGTACACTATTGCTGTTCTTGGATATAAAGGGGAGGAAGAGTCAACTGTGTTGGAGTTGACATATAACTACGGTGTTACCGAGTACTCTAAGGGAAATGGTTATGCACAGATTGCAATTGGTACTGATGACGTATACAAAAGCGCCGAGGTATTAAACCTAGTCACGCAAGAGCTTGGAGGGAAGATCACTCGGCAACCAGGACCGATTCCCGGCCTTAACACGAAAATTGTTTCGTTTGTTGACCCGGACGGATGGAAAACTGTGTTGGTTGACAATGAAGATTTCCTGAAGGAGCTAGAGAAGGCGCTGGAGTGA 852 0.4354 MADIDWPKKDNRRLLHVVYRVGDLDRAIKFYTQALGMKLLRQRDIPEEKYANAFVGFGDETSHFAIELTYNYGVTSYDVGDGFGHFGIATQDVYKLVEHIRAFGGNITREAGPVQGGTTVIAFVKDPDGYTFALIQRSVFVDPFVQISLRVGDLERDIKFYEKALGLKVLRKNDNPESKYTIAVLGYKGEEESTVLELTYNYGVTEYSKGNGYAQIAIGTDDVYKSAEVLNLVTQELGGKITRQPGPIPGLNTKIVSFVDPDGWKTVLVDNEDFLKELEKALE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00234 283 NCBIfam lactoylglutathione lyase 13 138 IPR004361 GO:0004462|GO:0046872
Vivi1g00234 283 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 12 137 IPR029068 -
Vivi1g00234 283 PANTHER LACTOYLGLUTATHIONE LYASE 4 279 - -
Vivi1g00234 283 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 143 271 IPR037523 -
Vivi1g00234 283 CDD GlxI_Ni 14 135 - -
Vivi1g00234 283 ProSitePatterns Glyoxalase I signature 1. 16 37 IPR018146 GO:0004462|GO:0046872
Vivi1g00234 283 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 14 133 IPR004360 -
Vivi1g00234 283 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 146 265 IPR004360 -
Vivi1g00234 283 Gene3D - 140 279 IPR029068 -
Vivi1g00234 283 Gene3D - 1 138 IPR029068 -
Vivi1g00234 283 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 13 137 IPR037523 -
Vivi1g00234 283 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 145 270 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00234 Vivi-Chr1 4489129 4491688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00234 146 270 Calmodulin-binding Proteins AT1G08110 28.667 7.89e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00234 K01759 - gmx:100793089 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00234 1 4489129 4491688 Vivi1g00234 1 4489129 4491688 ECH
Vivi1g00234 1 4489129 4491688 Vivi1g00234 1 4489129 4491688 PCT