Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00213 ATGGCCATTTCATCTTCACTTCTCTCACTTTCATTTTTCCTACTAACAATTGCTTTAACTTTTGTTAATGCACATTCAAAAGACTACTACTATAACACTAATAAACCAAACCTCAATGTGATAGATTCGTGTTGGCGCGCCAAACCGAATTGGTCATCAAACCGAAAAGCCTTAGCTGATTGTGCTATTGGTTTTGGCAAAGATGCAATTGGAGGCAAATATGGTGCAATATATATAGTTACTGATTCATCTGATGATCCTGTGACTCCGAAACAAGGTACACTTCGTTATGGCGCGATACAAACGAAGCCGCTTTGGATTATTTTCGATAGGGACATGGTTATTAGATTGAAGAATGAACTTATTATGAATAGTTATAAGACTATTGATGGTAGAGGAGTGAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTGAATCATGTGATTATACATGGAATTAGTATTCATGATTGTAAACCGAGTAATGCCGGACTTGTTAGAAGTAGTCCTGATCATGTTGGTCATCGACAAGGCGCGGATGGTGATGCTATTAGTATATTTGCTTCCTCGAATATTTGGATTGATCATTGCTTTTTGGCTAGAAGTAGTGATGGATTGATTGATATTATTCATGCTTCAACTGCTGTTACTGTTTCTAACAATTACTTCACTCAGCATGACAAAGTTATGTTGCTAGGACACAATGATGAATACACCGCGGATAAAATAATGAAAGTAACAATAGTTTTCAATCGGTTCGCTAGTGGACTAATCGAAAGAATGCCAAGGGTGAGATTTGGTTATGCACATGTGGCGAACAACCAGTATGATGAGTGGAAAATGTATGCTATAGGAGGAAGTGCTAACCCAACAATTTTAAGTGAAGGGAACTTTTTTACAGCACCAAATGACCATAATTCAAAACAGGTTACAAAGAGAGAAACAAAGGGAAAGGGGAATTGGAAAAGCTGGAAATGGAGATCTTCAAAAGATGTGTTCTCAAATGGTGCTTATTTTGTACCATCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTACTGCTGTTCCAGGTTATATGGTGCCTGCTATAACACTCAATGCAGGTCCATTGAATTGCTATGTTGGAAGATCATGTTAA 1164 0.3737 MAISSSLLSLSFFLLTIALTFVNAHSKDYYYNTNKPNLNVIDSCWRAKPNWSSNRKALADCAIGFGKDAIGGKYGAIYIVTDSSDDPVTPKQGTLRYGAIQTKPLWIIFDRDMVIRLKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVNHVIIHGISIHDCKPSNAGLVRSSPDHVGHRQGADGDAISIFASSNIWIDHCFLARSSDGLIDIIHASTAVTVSNNYFTQHDKVMLLGHNDEYTADKIMKVTIVFNRFASGLIERMPRVRFGYAHVANNQYDEWKMYAIGGSANPTILSEGNFFTAPNDHNSKQVTKRETKGKGNWKSWKWRSSKDVFSNGAYFVPSGYGSCAPNYTPSQSFTAVPGYMVPAITLNAGPLNCYVGRSC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00213 387 Gene3D - 38 380 IPR012334 -
Vivi1g00213 387 SUPERFAMILY Pectin lyase-like 59 387 IPR011050 -
Vivi1g00213 387 Pfam Pectate lyase 119 303 IPR002022 -
Vivi1g00213 387 SMART amb_all 112 309 IPR002022 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Vivi1g00213 387 PRINTS Pollen allergen Amb family signature 358 381 IPR018082 -
Vivi1g00213 387 PANTHER PECTATE LYASE 18-RELATED 35 385 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00213 Vivi-Chr1 4196050 4197619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00213 11 387 Polysaccharide Lyase AT1G11920 67.363 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00213 K01728 - gmx:100807483 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00213 1 4196050 4197619 Vivi1g00213 1 4196050 4197619 ECH
Vivi1g00213 1 4196050 4197619 Vivi4g03253 4 146915311 146916989 PCT