Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00210 ATGGAAGTCGTAGTTCCTAGACGAGTACGGTCAAATAAACAGACTAGTAAGTTGAAGTTGTCTGGATGCTCAAAAGCTTTTGGAAGTTTAAAGAGAAAGGCTGAAGAAATTCATGAGTGTGGTGATAATGAGAAACCTGAATCGGAAATGAAGGAAAATCCTACAGTATCACAAGAAGAGCCAAGCAAAATCCCAAGATGCTCAAATTATTTTGGGATTTCATATAAAAGAAGATTTCAAGAATGTCATAGACCTCATGCCGATAAAAATTCAGAAGCCGTAAAAGATGTTATGAAATGTTTAAAGGAGACATCTAATCTCCCATCTAAGAAAAGAGTTAAGTCAAAGAAGCGTGCTCTTTTAAACAAGAAACAGAAACAGGAACTTGAAGATGATCTATTGATGGATGATGTTGAAGAAGATGATGAAATGTTTTTTCTTCTTAAGTCAAAGAGCAGGAGCAGAACTGGTAGAAACAATAGCACAATGGATGTTCAACAAAATACTCGGAAATGTCATCAGTGCCTGAAAAAGGAAAGAATGTCTTTTGTGCCATGTACTAAATGCAACAAAATGTATTGTATGCGATGCATCAACCAATGGTACCCTGATATGTCTATAGAAGAAGTTGCTGAAAGTTGCCCATTTTGTCTTAAAAATTGTAATTGCAATGTTTGCTTGCGTTCGAAAGGAACAATTAAGACATCTAACATGGAGATCACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATTAACTTACTCCATCCATATCTAAAACAAATTTGTCATGAACAAAGTCAAGAGGTAGATATTGAAGCCAAAATACAAGGAAAATCTTCTTCTGAGTTTGTGGTACCACAAAGTCTTTGTTGGGATAATGAGCGTGTCTATTGTGATTATTGTGCTACCTCAATTATTGACCTTCATCGAAGCTGCCCCAGTTGTTCCTATGAACTTTGCCTTAAATGTTGCCAAGAAGTTCGTGATGGAAGTATTACTCCCCGTGCTGATATGAAATTCCCATATGTGAATAGGGGCTATGACTATATGCATGGTGGTGACCCTCTACCATTGTCTTGTGATTTAGAGACTTCAGATGGTCATCTTGAGATATCTACAAAGTGGAATGCACAGGCTGATGGAAGAATTTGTTGTGCACCGAAGGAGATGGGAGGTTGTGGTAGTTCTGTGTTGGAGCTGAGACGCACCCTCCCACATAGGTGGATGCCTGACATGGAAGTTAAAGCTCACAATATGCTGAAAAATTGGGAAACTGAACAAACAACTCTTCAGTGGGAAGGAGCTGCATCAAACCACAACTCAATGGAAAAGGAATATTTTTCAGAGTCAAGAGACATTTTAAAACAAGGGATGTCGCTCTTCCAAAAACATTGGGCTAATGGCGAACCGATTATTGTTCGTGATGTTCTAAAACAGGGTACAGGTCTGAGCTGGGAGCCAATGGTAATGTGGCGTGCTTTGTGTGATAATGTGGGTTCAGTTATGAGTTCAAAAATGTCAGATGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGAAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGACGAACATATAGAAATCTCTGGCCAGAGATGCTAAAGCTAAAAGACTGGCCTCCTTCTGATAAATTTGAAGATCTTTTGCCTCGTCACTGTGATGAATTTATTCATTCCTTGCCATTCCAACAATATACTGATCCTCGGGCTGGAATTCTCAATCTGGCAGTAAAGTTGCCAGCCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAGAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATGTTTTGACCCATACGGCAGAGGTACAATTAACCGATGAGCAGCATTTGGCTATTCCCAAATTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGTGCTCCAGAAAGGGCTGCTAGATGCCTAAATAGTCGACTTTGTGACAACAGAGAACATGAAAATGAAGAAGTATTAGAATGTCACTATAGGGATAACCATCCTATTGAAGTCAGTGGAGATATGTTTCGAAATGACGTGTCCGAGGGTGGCACTTTTTCTGCTACTTCTACAGAAAACGAAACAACGGTAACAGGTAGTGCCCTGTGGGATATATTTCGAAGAGAGGACACTGAAAAGCTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGACATACTTATTGTTCGCAGATTGAAGAGGTTGTACATCCAATTCACGACCAGTGCTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAGCAAAAACTCGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTCCATGAGTGTCTTCGCTTAACTGAGGAATTCCGCCAGCTTCCGAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAAATGATAGTTTATGCCGTTGATCAAGCTGTCAACGACCTACAGGATTTACTCGATTCTTCTTGA 2655 0.3977 MEVVVPRRVRSNKQTSKLKLSGCSKAFGSLKRKAEEIHECGDNEKPESEMKENPTVSQEEPSKIPRCSNYFGISYKRRFQECHRPHADKNSEAVKDVMKCLKETSNLPSKKRVKSKKRALLNKKQKQELEDDLLMDDVEEDDEMFFLLKSKSRSRTGRNNSTMDVQQNTRKCHQCLKKERMSFVPCTKCNKMYCMRCINQWYPDMSIEEVAESCPFCLKNCNCNVCLRSKGTIKTSNMEITNYEKAQYLHYMINLLHPYLKQICHEQSQEVDIEAKIQGKSSSEFVVPQSLCWDNERVYCDYCATSIIDLHRSCPSCSYELCLKCCQEVRDGSITPRADMKFPYVNRGYDYMHGGDPLPLSCDLETSDGHLEISTKWNAQADGRICCAPKEMGGCGSSVLELRRTLPHRWMPDMEVKAHNMLKNWETEQTTLQWEGAASNHNSMEKEYFSESRDILKQGMSLFQKHWANGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVGSVMSSKMSDVKAIDCMANCEVEINTRQFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIHSLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNVLTHTAEVQLTDEQHLAIPKLKEAHKAQDEREHCAPERAARCLNSRLCDNREHENEEVLECHYRDNHPIEVSGDMFRNDVSEGGTFSATSTENETTVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSQIEEVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTEEFRQLPKNHKAREDKLEIKKMIVYAVDQAVNDLQDLLDSS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00210 884 SUPERFAMILY Clavaminate synthase-like 462 873 - -
Vivi1g00210 884 MobiDBLite consensus disorder prediction 37 63 - -
Vivi1g00210 884 MobiDBLite consensus disorder prediction 37 56 - -
Vivi1g00210 884 ProSiteProfiles JmjC domain profile. 581 847 IPR003347 -
Vivi1g00210 884 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 167 239 IPR018866 -
Vivi1g00210 884 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 46 881 IPR045109 GO:0032454|GO:0033169
Vivi1g00210 884 Coils Coil 110 130 - -
Vivi1g00210 884 ProSiteProfiles Zinc finger RING-type profile. 172 217 IPR001841 -
Vivi1g00210 884 SMART cupin_9 562 847 IPR003347 -
Vivi1g00210 884 Gene3D Cupin 445 856 - -
Vivi1g00210 884 Pfam JmjC domain, hydroxylase 717 830 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00210 Vivi-Chr1 4158381 4164359 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1g00210 JmjC 5.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00210 K15601 - gmx:100797860 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00210 1 4158381 4164359 Vivi1g00210 1 4158381 4164359 ECH
Vivi1g00210 1 4158381 4164359 Vivi1g00209 1 4158381 4164360 PCT