Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00209 ATGGAAGTCGTAGTTCCTAGACGAGTACGGTCAAATAAACAGACTAGTAAGTTGAAGTTGTCTGGATGCTCAAAAGCTTTTGGAAGTTTAAAGAGAAAGGCTGAAGAAATTCATGAGTGTGGTGATAATGAGAAACCTGAATCGGAAATGAAGGAAAATCCTACAGTATCACAAGAAGAGCCAAGCAAAATCCCAAGATGCTCAAATTATTTTGGGATTTCATATAAAAGAAGATTTCAAGAATGTCATAGACCTCATGCCGATAAAAATTCAGAAGCCGTAAAAGATGTTATGAAATGTTTAAAGGAGACATCTAATCTCCCATCTAAGAAAAGAGTTAAGTCAAAGAAGCGTGCTCTTTTAAACAAGAAACAGAAACAGGAACTTGAAGATGATCTATTGATGGATGATGTTGAAGAAGATGATGAAATGTTTTTTCTTCTTAAGTCAAAGAGCAGGAGCAGAACTGGTAGAAACAATAGCACAATGCAGGATGTTCAACAAAATACTCGGAAATGTCATCAGTGCCTGAAAAAGGAAAGAATGTCTTTTGTGCCATGTACTAAATGCAACAAAATGTATTGTATGCGATGCATCAACCAATGGTACCCTGATATGTCTATAGAAGAAGTTGCTGAAAGTTGCCCATTTTGTCTTAAAAATTGTAATTGCAATGTTTGCTTGCGTTCGAAAGGAACAATTAAGACATCTAACATGGAGATCACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATTAACTTACTCCATCCATATCTAAAACAAATTTGTCATGAACAAAGTCAAGAGGTAGATATTGAAGCCAAAATACAAGGAAAATCTTCTTCTGAGTTTGTGGTACCACAAAGTCTTTGTTGGGATAATGAGCGTGTCTATTGTGATTATTGTGCTACCTCAATTATTGACCTTCATCGAAGCTGCCCCAGTTGTTCCTATGAACTTTGCCTTAAATGTTGCCAAGAAGTTCGTGATGGAAGTATTACTCCCCGTGCTGATATGAAATTCCCATATGTGAATAGGGGCTATGACTATATGCATGGTGGTGACCCTCTACCATTGTCTTGTGATTTAGAGACTTCAGATGGTCATCTTGAGATATCTACAAAGTGGAATGCACAGGCTGATGGAAGAATTTGTTGTGCACCGAAGGAGATGGGAGGTTGTGGTAGTTCTGTGTTGGAGCTGAGACGCACCCTCCCACATAGGTGGATGCCTGACATGGAAGTTAAAGCTCACAATATGCTGAAAAATTGGGAAACTGAACAAACAACTCTTCAGTGGGAAGGAGCTGCATCAAACCACAACTCAATGGAAAAGGAATATTTTTCAGAGTCAAGAGACATTTTAAAACAAGGGATGTCGCTCTTCCAAAAACATTGGGCTAATGGCGAACCGATTATTGTTCGTGATGTTCTAAAACAGGGTACAGGTCTGAGCTGGGAGCCAATGGTAATGTGGCGTGCTTTGTGTGATAATGTGGGTTCAGTTATGAGTTCAAAAATGTCAGATGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGAAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGACGAACATATAGAAATCTCTGGCCAGAGATGCTAAAGCTAAAAGACTGGCCTCCTTCTGATAAATTTGAAGATCTTTTGCCTCGTCACTGTGATGAATTTATTCATTCCTTGCCATTCCAACAATATACTGATCCTCGGGCTGGAATTCTCAATCTGGCAGTAAAGTTGCCAGCCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAGAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATGTTTTGACCCATACGGCAGAGGTACAATTAACCGATGAGCAGCATTTGGCTATTCCCAAATTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGTGCTCCAGAAAGGGCTGCTAGATGCCTAAATAGTCGACTTTGTGACAACAGAGAACATGAAAATGAAGAAGTATTAGAATGTCACTATAGGGATAACCATCCTATTGAAGTCAGTGGAGATATGTTTCGAAATGACGTGTCCGAGGGTGGCACTTTTTCTGCTACTTCTACAGAAAACGAAACAACGGTAACAGGTAGTGCCCTGTGGGATATATTTCGAAGAGAGGACACTGAAAAGCTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGACATACTTATTGTTCGCAGATTGAAGAGGTTGTACATCCAATTCACGACCAGTGCTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAGCAAAAACTCGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTCCATGAGTGTCTTCGCTTAACTGAGGAATTCCGCCAGCTTCCGAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAAATGATAGTTTATGCCGTTGATCAAGCTGTCAACGACCTACAGGATTTACTCGATTCTTCTTGA 2658 0.398 MEVVVPRRVRSNKQTSKLKLSGCSKAFGSLKRKAEEIHECGDNEKPESEMKENPTVSQEEPSKIPRCSNYFGISYKRRFQECHRPHADKNSEAVKDVMKCLKETSNLPSKKRVKSKKRALLNKKQKQELEDDLLMDDVEEDDEMFFLLKSKSRSRTGRNNSTMQDVQQNTRKCHQCLKKERMSFVPCTKCNKMYCMRCINQWYPDMSIEEVAESCPFCLKNCNCNVCLRSKGTIKTSNMEITNYEKAQYLHYMINLLHPYLKQICHEQSQEVDIEAKIQGKSSSEFVVPQSLCWDNERVYCDYCATSIIDLHRSCPSCSYELCLKCCQEVRDGSITPRADMKFPYVNRGYDYMHGGDPLPLSCDLETSDGHLEISTKWNAQADGRICCAPKEMGGCGSSVLELRRTLPHRWMPDMEVKAHNMLKNWETEQTTLQWEGAASNHNSMEKEYFSESRDILKQGMSLFQKHWANGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVGSVMSSKMSDVKAIDCMANCEVEINTRQFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIHSLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNVLTHTAEVQLTDEQHLAIPKLKEAHKAQDEREHCAPERAARCLNSRLCDNREHENEEVLECHYRDNHPIEVSGDMFRNDVSEGGTFSATSTENETTVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSQIEEVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTEEFRQLPKNHKAREDKLEIKKMIVYAVDQAVNDLQDLLDSS 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00209 885 MobiDBLite consensus disorder prediction 37 63 - -
Vivi1g00209 885 ProSiteProfiles JmjC domain profile. 582 848 IPR003347 -
Vivi1g00209 885 ProSiteProfiles Zinc finger RING-type profile. 173 218 IPR001841 -
Vivi1g00209 885 MobiDBLite consensus disorder prediction 37 56 - -
Vivi1g00209 885 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 168 240 IPR018866 -
Vivi1g00209 885 SMART cupin_9 563 848 IPR003347 -
Vivi1g00209 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 47 882 IPR045109 GO:0032454|GO:0033169
Vivi1g00209 885 Coils Coil 110 130 - -
Vivi1g00209 885 Gene3D Cupin 446 857 - -
Vivi1g00209 885 Pfam JmjC domain, hydroxylase 718 831 IPR003347 -
Vivi1g00209 885 SUPERFAMILY Clavaminate synthase-like 463 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00209 Vivi-Chr1 4158381 4164360 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1g00209 JmjC 5.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00209 K15601 - gmx:100797860 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00209 1 4158381 4164360 Vivi1g00209 1 4158381 4164360 ECH
Vivi1g00210 1 4158381 4164359 Vivi1g00209 1 4158381 4164360 PCT