Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00203 ATGAGTCAACTCGGTTTCATATTACACGAATCGCTCCGTCCTCAGAGAGAACCAAGAACCTTACTCGGTTTATTAACAGAACAAATGGACGGTGCAGATTCATCAACAACGAGGCGACGTAGTCTGAAAGAGCGGTTCAGATTCACCGGTATCGGTGGTTGCTGTGGCGCCACCTGGGTTTTCCGTCCAATTATCCGACACGAACATCACCACAACCAACAACAACAACAGCAACAACAGCGGCAAGAGGAAGCAAGAGAAGGAGAAGCTAATGTGGAGCAACAAGAACTTCAGGTCCAAGATCCGAATCCGGATCCGTCTAGTTCTTCTGGGATGAATCTTGCGGCGGCATTGGCGGCGGAGCGACAGATGAGGGGAACGGAGGAAACTAGCGGCGGAGAAAGAGCGACGCCGTGGAGAGTTTCGTTGATGAAACTGTTGGAAGAAACGGAAGTGGAAAGTGAGAGTACTACGACGACGACGGTTATGGAGGGGAGTGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGGAACTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGATATTTTCTGA 657 0.4977 MSQLGFILHESLRPQREPRTLLGLLTEQMDGADSSTTRRRSLKERFRFTGIGGCCGATWVFRPIIRHEHHHNQQQQQQQQRQEEAREGEANVEQQELQVQDPNPDPSSSSGMNLAAALAAERQMRGTEETSGGERATPWRVSLMKLLEETEVESESTTTTTVMEGSDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00203 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 217 IPR013083 -
Vivi1g00203 218 PANTHER OS01G0917900 PROTEIN 8 218 - -
Vivi1g00203 218 CDD RING-HC 170 207 - -
Vivi1g00203 218 SUPERFAMILY RING/U-box 159 215 - -
Vivi1g00203 218 ProSiteProfiles Zinc finger RING-type profile. 170 208 IPR001841 -
Vivi1g00203 218 MobiDBLite consensus disorder prediction 93 111 - -
Vivi1g00203 218 Pfam Zinc finger, C3HC4 type (RING finger) 167 212 - -
Vivi1g00203 218 MobiDBLite consensus disorder prediction 70 111 - -
Vivi1g00203 218 SMART ring_2 170 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00203 Vivi-Chr1 3909363 3910647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00203 21 218 C3H Transcription Factor Family AT4G22250 52.381 1.82e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00203 - - mtr:11446421 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00203 1 3909363 3910647 Vivi1g00203 1 3909363 3910647 ECH
Vivi1g00203 1 3909363 3910647 Vivi1g00203 1 3909363 3910647 PCT