Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00201 ATGGGGAAATCAGGGGGTAGAAAGAAGAAAGGTGGTGCTGCTGCTGTTGTTGATAATTCAGTCTCTGCACAAACTCCGAATGGCGGTGTTGAATTGGATTCATCAATTTTTTTGAAAAAGGCGCATGAAATGAAGGAGGAAGGGAATAGGAGGTTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTAAACTCACGCCCAAAATTCATCCTGACAGAGCTGTTTTTCATAGCAATAGGGCTGCATGTTTGATGCAAATGAAACCGATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCGTTGTTTGTTCGGGCTCTTCTTCGGAGGGCTCGGGCGTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTGCAGGATGTGCAATTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTGCTCAGAGGTTGAGGGCTGCGTTTGGGCCTCGGCAGGAAGCTCAGCAGGATCTTCACAGTCGGCCTTCTCCTGCTGCTCTTGGGGCTTCGGCTGTTCGTGGTGCTCCTATTGCGGGGTTAGGTCCTTGTTTGCCTGCACGGCCTGGATCGAAGAAGGGGGTGAATTCTGGAGTTGGGGCCGTTGTTTCTCCTAATAACAAGGTTGACAAGTCTCAGAATGTTTTACTGCCGGCTGAGAATGGCTCGGAGACAACTAAGCGTCAGCAGAATGTTGTGTTGAAGCCTTTAAGTAATGGTCCTGCAGTGCAGCGTAACTCGAAAGATGTGAACCAGAAGGATATTCGTGGGCAGCTGTCGGAGGTTGCGATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTTGCTCAGATGCCGGTGAAATGCAGTTTCAGAGTACTGAGAGATGTGGTAAGCAAAAGATTTCCTTCGTCAAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACGTCTACGGATGAACTCAGATTAGCAGAGTCTTTTGTTGATAGCCATTTGCTGAAAGAGCCGGAATTAGATATAAGTGATTCCATTTCGGTGCTGAGACTTCATATTGTTGAAGTTAATCCGGAACAGGAGCCAGCTTTGTTGGAAGAAGAGGAAGAAAAGCTTGTTGAGAATGAAGTGACCAAGGGAGATGAGAATGGATCTCATTCTTCCCTTGGTGAATCTGTCCCTGAAGTTACAGAAGTTACCGAGGTTCCTGATACCGAGGTTGACAAGATAGCTGCAAAGAAGGATGCTTCCAAGGAAAAGCCAGGAGCCACCGGAGAAAATGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCCCATGTTGGTATTGACCCGGATGCTCATATTGACTTGCATGAACTTGGGATGGAGCTTTGTTCAGAGGCACTTGAAGAAACAGTAACTAGTGAGGAGGCTCAGGATTTATTCGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCAGCATTGGCATTCTTCAATTGGGGTAATGTACACATGTGCGCTGCTAGGAAGCGGATTCCCTTAGATGAAACCGCTGGAAAAGAGGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGATAAGTATTCTTTGGCAAGAGAAAAATACGAGGAAGCACTCGTGATCAAACCAGATTTCTACGAGGGGCTGTTGGCTCTAGGCCAGCAACAATTTGAAATGGCCAAACTCCATTGGTCTTTCGCAATTGCTAAGAAGATAGATTTAACAAGTTGGGATCCAACGGAAACTCTTCAATTGTTTAACAGTGCCGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAGTTGGAGGAACAAAGAGCAAAGGAGCTAAAAGACCCAAATGCAACCAAGAAAGAAGAACTATTGAGAAGAAGGAAGAAACATGGCAGTACTACCGAAGGTGAGGCTTCTGGTGTAGCCGGTCAGAGTGAGATATCTGCGGAAGAAGCCGCTGAGCAAGCAGTGGTCATGAGATCACAGATTCACCTCTTTTGGGGCAATATGCTTTTCGAAAAATCCCAAGTTGAATGCAAATTAGGAATGGATGGTTGGAAGAAAAACCTAGATGCTGCAACAGAAAGGTTTAAGCTTGCAGGAGCATCCGAGGCAGATATTTCAATGGTTCTAAAGAATCATTCTTCAAATGGTGGTGATACAAAAGGCGATGATAAAAAAGTTCAGAGTACACTTCCCAACAAGACTGGTGAACTAGAGATCAATAAGGCAAGTCAAGAATGA 2322 0.4496 MGKSGGRKKKGGAAAVVDNSVSAQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALKLTPKIHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPLFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPGSKKGVNSGVGAVVSPNNKVDKSQNVLLPAENGSETTKRQQNVVLKPLSNGPAVQRNSKDVNQKDIRGQLSEVAIRWRPLKLVYDHDIRLAQMPVKCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESFVDSHLLKEPELDISDSISVLRLHIVEVNPEQEPALLEEEEEKLVENEVTKGDENGSHSSLGESVPEVTEVTEVPDTEVDKIAAKKDASKEKPGATGENECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDETAGKEVVAEQLQVAYDWVKDKYSLAREKYEEALVIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTSWDPTETLQLFNSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKHGSTTEGEASGVAGQSEISAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADISMVLKNHSSNGGDTKGDDKKVQSTLPNKTGELEINKASQE 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00201 773 SMART tpr_5 115 148 IPR019734 GO:0005515
Vivi1g00201 773 SMART tpr_5 79 114 IPR019734 GO:0005515
Vivi1g00201 773 SMART tpr_5 41 74 IPR019734 GO:0005515
Vivi1g00201 773 PANTHER PROTEIN CLMP1 1 761 IPR044517 -
Vivi1g00201 773 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vivi1g00201 773 CDD PB1 282 368 - -
Vivi1g00201 773 MobiDBLite consensus disorder prediction 389 414 - -
Vivi1g00201 773 MobiDBLite consensus disorder prediction 633 660 - -
Vivi1g00201 773 ProSiteProfiles PB1 domain profile. 279 371 IPR000270 GO:0005515
Vivi1g00201 773 SUPERFAMILY TPR-like 38 172 IPR011990 GO:0005515
Vivi1g00201 773 Gene3D Tetratricopeptide repeat domain 31 173 IPR011990 GO:0005515
Vivi1g00201 773 MobiDBLite consensus disorder prediction 736 773 - -
Vivi1g00201 773 Coils Coil 613 633 - -
Vivi1g00201 773 MobiDBLite consensus disorder prediction 633 673 - -
Vivi1g00201 773 Pfam PB1 domain 279 370 IPR000270 GO:0005515
Vivi1g00201 773 Gene3D - 281 351 - -
Vivi1g00201 773 SUPERFAMILY TPR-like 493 589 IPR011990 GO:0005515
Vivi1g00201 773 MobiDBLite consensus disorder prediction 758 773 - -
Vivi1g00201 773 SMART PB1_new 279 371 IPR000270 GO:0005515
Vivi1g00201 773 SUPERFAMILY CAD & PB1 domains 277 343 - -
Vivi1g00201 773 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00201 Vivi-Chr1 3886540 3889613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00201 41 159 Calmodulin-binding Proteins AT3G25230 30.769 1.03e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00201 K26538 - gmx:100786963 1131.32