Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00197 ATGAAACTCGATAACTCCAACTCTAACTCCAACGGCCAGATCGCCTTTCCCGCCGCCGTTGATGTTACTCCGCCGCATAACTCCGATGACACCGATGAAGCATTCGTGCCGCCGCTGAATTTCGCGATGGTTGATAACGGTATTTTCCGGTCCGGATTTCCAGATTCTGCGAATTTCGGATTCATGAAATCGCTTCGACTTCGTTCTGTAATATGTTTGTGCCCTGAACCCTATCCTGAAACCACTGCGGAGTTTTTGAAGGCTAATGGAATTAGGCTTTATCAATTTGGTATTGATGGCTGTAAGGAACCCTTTGTCAACATCCCAAATGATAAGATTCGCGAAGCTTTAAAAGTAGTGCTCGATGTTAGGAACCATCCCGTGCTGATTCATTGCAAACGAGGGAAGCATCGCACTGGTTGTCTTGTGGGATGCATACGAAGATTGCAGAGGTGGTGTCTATCATCAATTTTTGATGAGTATCAAAGATTTGCAGCTGCCAAAGCTAGAGTCTCAGACCAGAGGTTCATTGAATTGTTTGATATTTCCAGTTTGAAGCATAACCCACTGTCATTTTCATGCTCAAGGAAATAG 594 0.4461 MKLDNSNSNSNGQIAFPAAVDVTPPHNSDDTDEAFVPPLNFAMVDNGIFRSGFPDSANFGFMKSLRLRSVICLCPEPYPETTAEFLKANGIRLYQFGIDGCKEPFVNIPNDKIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQRWCLSSIFDEYQRFAAAKARVSDQRFIELFDISSLKHNPLSFSCSRK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00197 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 130 140 IPR016130 GO:0016311|GO:0016791
Vivi1g00197 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 40 194 IPR020422 GO:0006470|GO:0008138
Vivi1g00197 197 CDD PFA-DSP_Siw14 35 181 - -
Vivi1g00197 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 34 188 - -
Vivi1g00197 197 Pfam Tyrosine phosphatase family 36 189 IPR004861 -
Vivi1g00197 197 Gene3D Protein tyrosine phosphatase superfamily 34 184 IPR029021 -
Vivi1g00197 197 PRINTS Plant and fungal dual specificity phosphatase signature 91 105 IPR020428 GO:0016791
Vivi1g00197 197 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Vivi1g00197 197 PRINTS Plant and fungal dual specificity phosphatase signature 35 52 IPR020428 GO:0016791
Vivi1g00197 197 PRINTS Plant and fungal dual specificity phosphatase signature 72 85 IPR020428 GO:0016791
Vivi1g00197 197 FunFam probable tyrosine-protein phosphatase At1g05000 34 184 - -
Vivi1g00197 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 182 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00197 Vivi-Chr1 3765713 3768674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00197 33 197 Protein tyrosine phosphatase (PTP) family AT4G03960 76.364 2.91e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00197 K18045 - gmx:100785520 343.584