Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00194 ATGAGCTTTGCTAGAACTTCAATGGCAGGTTCATGGTTCACCAAGCTTCGCATGCGAAGGTCTAAGAGTAATAAACCTTTACAAGAACCGTCTTCTTCGTCTTCTAAGCCTCGGTTGAATTGTGATGCAGACAACATGGAAAGAAAGAGATTTGATAGCTTAGAATCATGGTCCATGATATTGGACTCTGAGAATGTCGAAACATGGGAAGCTTCGAAGGAGGATCAGGAAGAATGGACGGCCGATCTTTCTCAGCTTTTCATCGGTAACAAGTTTGCGTCCGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAACAAAGAGCTGTTGCTGTTAAAATGGTTAGGATTCCTAATCAGAATGAAGAGAGAAGAACATTGCTAGAACAACAATTCAAATCTGAAGTTGCTTTACTCTCACGTCTCTTTCATCCTAACATAGTGCAGTTTATTGCAGCGTGTAAAAAACCGCCTGTGTACTGTATAATAACAGAATACATGTCACAAGGAACTCTAAGGATGTATCTGAACAAGAAAGAACCATACTCTCTTTCGATCGAAACTGTACTAAGGTTAGCGCTTGACATATCAAGAGGTATGGAGTACCTTCATTCTCAAGGTGTGATTCATAGAGATCTCAAATCAAATAACTTGCTTCTCAATGACGAGATGAGGGTTAAGGTGGCGGATTTCGGGACATCGTGTCTTGAAACACGATGCCGAGAGACTAAGGGAAATATGGGAACTTATCGTTGGATGGCGCCTGAGATGATTAAGGAAAAACCTTATACGCGTAAAGTTGATGTTTATAGCTTTGGAATTGTGCTTTGGGAACTTACAACTGCTCTGCTTCCTTTTCAAGGAATGACTCCGGTGCAAGCCGCTTTTGCAGTCGCTGAGAAGAACGAAAGGCCTCCAGTACCTGCAAGTTGTCAGCCAGCGCTTGCACATCTAATAAAGCGATGTTGGTCAGCAAATCCTTCAAAGAGACCGGATTTCAGCGATATTGTGTCTACTCTCGAGAGGTATGATGAATGTGTGAAGGAAGGTCTTCCTCTAACGCATCATTCAGGACTAGTCACCAAAAATTGTACTTAG 1098 0.4235 MSFARTSMAGSWFTKLRMRRSKSNKPLQEPSSSSSKPRLNCDADNMERKRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRTLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPVPASCQPALAHLIKRCWSANPSKRPDFSDIVSTLERYDECVKEGLPLTHHSGLVTKNCT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00194 365 MobiDBLite consensus disorder prediction 17 44 - -
Vivi1g00194 365 ProSiteProfiles Protein kinase domain profile. 86 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00194 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vivi1g00194 365 FunFam Serine/threonine-protein kinase isoform 1 76 168 - -
Vivi1g00194 365 Gene3D Phosphorylase Kinase; domain 1 75 168 - -
Vivi1g00194 365 FunFam serine/threonine-protein kinase HT1 169 362 - -
Vivi1g00194 365 CDD STKc_MAP3K-like 93 340 - -
Vivi1g00194 365 SUPERFAMILY Protein kinase-like (PK-like) 63 340 IPR011009 -
Vivi1g00194 365 PRINTS Tyrosine kinase catalytic domain signature 164 177 IPR001245 GO:0004672|GO:0006468
Vivi1g00194 365 PRINTS Tyrosine kinase catalytic domain signature 311 333 IPR001245 GO:0004672|GO:0006468
Vivi1g00194 365 PRINTS Tyrosine kinase catalytic domain signature 202 220 IPR001245 GO:0004672|GO:0006468
Vivi1g00194 365 PRINTS Tyrosine kinase catalytic domain signature 267 289 IPR001245 GO:0004672|GO:0006468
Vivi1g00194 365 PRINTS Tyrosine kinase catalytic domain signature 248 258 IPR001245 GO:0004672|GO:0006468
Vivi1g00194 365 SMART serkin_6 86 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00194 365 Pfam Protein tyrosine and serine/threonine kinase 88 340 IPR001245 GO:0004672|GO:0006468
Vivi1g00194 365 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 72 343 - -
Vivi1g00194 365 MobiDBLite consensus disorder prediction 25 40 - -
Vivi1g00194 365 Gene3D Transferase(Phosphotransferase) domain 1 169 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00194 Vivi-Chr1 3736327 3739348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00194 8 359 MAP Kinase Kinase Kinase AT1G62400 84.958 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi1g00194 PK_Tyr_Ser-Thr 1.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00194 - - vvo:131626819 741.495