Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00184 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACTACAAATGGAATGTTGTCTCCAACAACAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTGTTCACCGAAAAATGCTTATTAGGGCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCGTTCAGGGCATCGGGACACAAATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTACGGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATGCACAGACTGAGTCGGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGACCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTCCCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTTCTGTCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAGGGTAACCCTGTCTGAACAACTCGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTGACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGTGCTACTGTCGCTACAACAAAATTATTAGTAGCGTCTCCGTTTGGATGGTATAAGATTGAGATTGAGGTTACTCATGGGGGCAAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGTTGTTGGGTTTATCTGCATCCCAACTTCGTAACACTATGATTCAGGGTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCCGTCGTTATGATTATAAAAAATGATCTTATTATCCAGCAACTTAAGGGAAAATGGGGAACAGATGAGGAACCTATTCCAATCCAAACTGTCGTACCTGAGACTCTGGAGGTAGAAATTTTATACTGTGTATGCATTTTTTTACTTTTCCTGTGA 1311 0.4027 MSRPVERIAEINDGKELWKIVVRIHYKWNVVSNNKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHKYMIKFTAGTSVLDEDKHEIPPKSILFTSFTDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFSVMKDFIDRMPEESRVTLSEQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWYKIEIEVTHGGKSCNFVFWNRECEMLLGLSASQLRNTMIQGGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDLIIQQLKGKWGTDEEPIPIQTVVPETLEVEILYCVCIFLLFL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00184 436 SUPERFAMILY Nucleic acid-binding proteins 118 242 IPR012340 -
Vivi1g00184 436 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi1g00184 436 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi1g00184 436 CDD RPA1_DBD_A_like 19 103 - -
Vivi1g00184 436 Gene3D - 3 104 IPR012340 -
Vivi1g00184 436 Gene3D - 110 248 IPR012340 -
Vivi1g00184 436 Gene3D - 276 398 IPR012340 -
Vivi1g00184 436 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00184 Vivi-Chr1 3622675 3624853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00184 8 303 Core DNA Replication Machinery Family AT5G45400 20.312 9.34e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00184 - - vvo:131613993 770